==549307== Memcheck, a memory error detector ==549307== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==549307== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==549307== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainMassLumping -malloc_debug -malloc_dump -memory_info ==549307== Parent PID: 531165 ==549307== ==549307== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==549307== This could cause spurious value errors to appear. ==549307== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==549307== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==549307== This could cause spurious value errors to appear. ==549307== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==549307== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==549307== This could cause spurious value errors to appear. ==549307== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==549307== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==549307== This could cause spurious value errors to appear. ==549307== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==549307== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==549307== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==549307== Warning: set address range perms: large range [0x1732e000, 0x3732d000) (noaccess) ==549307== ==549307== FILE DESCRIPTORS: 14 open (3 std) at exit. ==549307== Open file descriptor 23: /dev/nvidia0 ==549307== at 0xA4FE7A4: open (open64.c:41) ==549307== by 0x163CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549307== by 0x163CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549307== by 0x16466B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549307== by 0x16354026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549307== by 0x1635D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549307== by 0x163D5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549307== by 0x1645FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549307== by 0x1621A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549307== by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549307== by 0xF42D023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==549307== by 0xF42DFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==549307== by 0x13FA746A: ??? ==549307== by 0xD2E9F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==549307== by 0xD2C5B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==549307== by 0xC5BDCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==549307== by 0xD256EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==549307== by 0x13F95F03: ??? ==549307== by 0xD28B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==549307== by 0x9DED418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==549307== by 0x9D86D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==549307== by 0xA887D38: PetscInitialize (pinit.c:924) ==549307== by 0x9CA8153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==549307== by 0x9CA81A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==549307== by 0x11C418: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==549307== by 0x117573: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==549307== by 0x11A0BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==549307== by 0x119FB9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==549307== by 0x11A5CD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==549307== by 0x115D75: main (TestMonodomainMassLumping.cpp:18) ==549307== ==549307== Open file descriptor 22: /dev/nvidia0 ==549307== at 0xA4FE7A4: open (open64.c:41) ==549307== by 0x163CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549307== by 0x163CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549307== by 0x1635407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549307== by 0x1635D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549307== by 0x163D5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549307== by 0x1645FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549307== by 0x1621A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549307== by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549307== by 0xF42D023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==549307== by 0xF42DFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==549307== by 0x13FA746A: ??? ==549307== by 0xD2E9F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==549307== by 0xD2C5B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==549307== by 0xC5BDCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==549307== by 0xD256EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==549307== by 0x13F95F03: ??? ==549307== by 0xD28B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==549307== by 0x9DED418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==549307== by 0x9D86D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==549307== by 0xA887D38: PetscInitialize (pinit.c:924) ==549307== by 0x9CA8153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==549307== by 0x9CA81A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==549307== by 0x11C418: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==549307== by 0x117573: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==549307== by 0x11A0BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==549307== by 0x119FB9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==549307== by 0x11A5CD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==549307== by 0x115D75: main (TestMonodomainMassLumping.cpp:18) ==549307== ==549307== Open file descriptor 21: /dev/nvidia0 ==549307== at 0xA4FE7A4: open (open64.c:41) ==549307== by 0x163CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549307== by 0x163CC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549307== by 0x1635DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549307== by 0x163D54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549307== by 0x1645FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549307== by 0x1621A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549307== by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549307== by 0xF42D023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==549307== by 0xF42DFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==549307== by 0x13FA746A: ??? ==549307== by 0xD2E9F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==549307== by 0xD2C5B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==549307== by 0xC5BDCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==549307== by 0xD256EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==549307== by 0x13F95F03: ??? ==549307== by 0xD28B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==549307== by 0x9DED418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==549307== by 0x9D86D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==549307== by 0xA887D38: PetscInitialize (pinit.c:924) ==549307== by 0x9CA8153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==549307== by 0x9CA81A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==549307== by 0x11C418: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==549307== by 0x117573: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==549307== by 0x11A0BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==549307== by 0x119FB9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==549307== by 0x11A5CD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==549307== by 0x115D75: main (TestMonodomainMassLumping.cpp:18) ==549307== ==549307== Open file descriptor 20: /dev/nvidia-uvm ==549307== at 0xA4FE7A4: open (open64.c:41) ==549307== by 0x16236F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549307== by 0x1621A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549307== by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549307== by 0xF42D023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==549307== by 0xF42DFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==549307== by 0x13FA746A: ??? ==549307== by 0xD2E9F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==549307== by 0xD2C5B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==549307== by 0xC5BDCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==549307== by 0xD256EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==549307== by 0x13F95F03: ??? ==549307== by 0xD28B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==549307== by 0x9DED418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==549307== by 0x9D86D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==549307== by 0xA887D38: PetscInitialize (pinit.c:924) ==549307== by 0x9CA8153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==549307== by 0x9CA81A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==549307== by 0x11C418: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==549307== by 0x117573: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==549307== by 0x11A0BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==549307== by 0x119FB9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==549307== by 0x11A5CD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==549307== by 0x115D75: main (TestMonodomainMassLumping.cpp:18) ==549307== ==549307== Open file descriptor 19: /dev/nvidiactl ==549307== at 0xA4FE7A4: open (open64.c:41) ==549307== by 0x163CB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549307== by 0x163D08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549307== by 0x1621A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549307== by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549307== by 0xF42D023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==549307== by 0xF42DFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==549307== by 0x13FA746A: ??? ==549307== by 0xD2E9F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==549307== by 0xD2C5B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==549307== by 0xC5BDCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==549307== by 0xD256EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==549307== by 0x13F95F03: ??? ==549307== by 0xD28B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==549307== by 0x9DED418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==549307== by 0x9D86D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==549307== by 0xA887D38: PetscInitialize (pinit.c:924) ==549307== by 0x9CA8153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==549307== by 0x9CA81A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==549307== by 0x11C418: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==549307== by 0x117573: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==549307== by 0x11A0BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==549307== by 0x119FB9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==549307== by 0x11A5CD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==549307== by 0x115D75: main (TestMonodomainMassLumping.cpp:18) ==549307== ==549307== Open file descriptor 12: ==549307== at 0xA4FF26D: pipe (pipe.c:29) ==549307== by 0x13F9507D: ??? ==549307== by 0xD28B4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==549307== by 0x9DED418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==549307== by 0x9D86D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==549307== by 0xA887D38: PetscInitialize (pinit.c:924) ==549307== by 0x9CA8153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==549307== by 0x9CA81A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==549307== by 0x11C418: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==549307== by 0x117573: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==549307== by 0x11A0BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==549307== by 0x119FB9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==549307== by 0x11A5CD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==549307== by 0x115D75: main (TestMonodomainMassLumping.cpp:18) ==549307== ==549307== Open file descriptor 8: /dev/shm/open_mpi.0000 ==549307== at 0xA503C0C: __open_nocancel (open64_nocancel.c:39) ==549307== by 0xA487BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==549307== by 0x9CDC822: ??? ==549307== by 0x9CDC96F: ??? ==549307== by 0xC5C46DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==549307== by 0xC5C4938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==549307== by 0xC57A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==549307== by 0xD28B2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==549307== by 0x9DED418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==549307== by 0x9D86D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==549307== by 0xA887D38: PetscInitialize (pinit.c:924) ==549307== by 0x9CA8153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==549307== by 0x9CA81A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==549307== by 0x11C418: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==549307== by 0x117573: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==549307== by 0x11A0BE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==549307== by 0x119FB9: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==549307== by 0x11A5CD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==549307== by 0x115D75: main (TestMonodomainMassLumping.cpp:18) ==549307== ==549307== Open file descriptor 115: ==549307== ==549307== ==549307== Open file descriptor 112: ==549307== ==549307== ==549307== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainMassLumping_valgrind.txt ==549307== ==549307== ==549307== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==549307== ==549307== ==549307== ==549307== HEAP SUMMARY: ==549307== in use at exit: 1,876,243 bytes in 11,744 blocks ==549307== total heap usage: 415,021 allocs, 403,277 frees, 1,734,602,123 bytes allocated ==549307== ==549307== LEAK SUMMARY: ==549307== definitely lost: 0 bytes in 0 blocks ==549307== indirectly lost: 0 bytes in 0 blocks ==549307== possibly lost: 0 bytes in 0 blocks ==549307== still reachable: 24 bytes in 2 blocks ==549307== suppressed: 1,876,219 bytes in 11,742 blocks ==549307== Reachable blocks (those to which a pointer was found) are not shown. ==549307== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==549307== ==549307== For lists of detected and suppressed errors, rerun with: -s ==549307== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 61 from 50)