==549290== Memcheck, a memory error detector ==549290== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==549290== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==549290== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainPurkinjeProblem -malloc_debug -malloc_dump -memory_info ==549290== Parent PID: 531165 ==549290== ==549290== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==549290== This could cause spurious value errors to appear. ==549290== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==549290== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==549290== This could cause spurious value errors to appear. ==549290== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==549290== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==549290== This could cause spurious value errors to appear. ==549290== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==549290== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==549290== This could cause spurious value errors to appear. ==549290== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==549290== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==549290== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==549290== Warning: set address range perms: large range [0x1732e000, 0x3732d000) (noaccess) ==549290== ==549290== FILE DESCRIPTORS: 14 open (3 std) at exit. ==549290== Open file descriptor 23: /dev/nvidia0 ==549290== at 0xA3C77A4: open (open64.c:41) ==549290== by 0x163CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549290== by 0x163CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549290== by 0x16466B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549290== by 0x16354026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549290== by 0x1635D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549290== by 0x163D5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549290== by 0x1645FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549290== by 0x1621A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549290== by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549290== by 0xF271023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==549290== by 0xF271FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==549290== by 0x13FA646A: ??? ==549290== by 0xF8C2F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==549290== by 0xF89EB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==549290== by 0xF84FCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==549290== by 0xF77CEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==549290== by 0x13F94F03: ??? ==549290== by 0xF7B14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==549290== by 0xBAC0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==549290== by 0xBA59D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==549290== by 0xA750D38: PetscInitialize (pinit.c:924) ==549290== by 0x9CA8153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==549290== by 0x9CA81A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==549290== by 0x12BA62: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==549290== by 0x12622D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==549290== by 0x128E32: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==549290== by 0x128CD2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==549290== by 0x129369: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==549290== by 0x124655: main (TestMonodomainPurkinjeProblem.cpp:19) ==549290== ==549290== Open file descriptor 22: /dev/nvidia0 ==549290== at 0xA3C77A4: open (open64.c:41) ==549290== by 0x163CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549290== by 0x163CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549290== by 0x1635407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549290== by 0x1635D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549290== by 0x163D5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549290== by 0x1645FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549290== by 0x1621A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549290== by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549290== by 0xF271023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==549290== by 0xF271FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==549290== by 0x13FA646A: ??? ==549290== by 0xF8C2F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==549290== by 0xF89EB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==549290== by 0xF84FCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==549290== by 0xF77CEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==549290== by 0x13F94F03: ??? ==549290== by 0xF7B14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==549290== by 0xBAC0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==549290== by 0xBA59D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==549290== by 0xA750D38: PetscInitialize (pinit.c:924) ==549290== by 0x9CA8153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==549290== by 0x9CA81A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==549290== by 0x12BA62: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==549290== by 0x12622D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==549290== by 0x128E32: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==549290== by 0x128CD2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==549290== by 0x129369: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==549290== by 0x124655: main (TestMonodomainPurkinjeProblem.cpp:19) ==549290== ==549290== Open file descriptor 21: /dev/nvidia0 ==549290== at 0xA3C77A4: open (open64.c:41) ==549290== by 0x163CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549290== by 0x163CC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549290== by 0x1635DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549290== by 0x163D54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549290== by 0x1645FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549290== by 0x1621A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549290== by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549290== by 0xF271023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==549290== by 0xF271FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==549290== by 0x13FA646A: ??? ==549290== by 0xF8C2F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==549290== by 0xF89EB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==549290== by 0xF84FCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==549290== by 0xF77CEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==549290== by 0x13F94F03: ??? ==549290== by 0xF7B14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==549290== by 0xBAC0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==549290== by 0xBA59D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==549290== by 0xA750D38: PetscInitialize (pinit.c:924) ==549290== by 0x9CA8153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==549290== by 0x9CA81A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==549290== by 0x12BA62: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==549290== by 0x12622D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==549290== by 0x128E32: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==549290== by 0x128CD2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==549290== by 0x129369: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==549290== by 0x124655: main (TestMonodomainPurkinjeProblem.cpp:19) ==549290== ==549290== Open file descriptor 20: /dev/nvidia-uvm ==549290== at 0xA3C77A4: open (open64.c:41) ==549290== by 0x16236F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549290== by 0x1621A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549290== by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549290== by 0xF271023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==549290== by 0xF271FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==549290== by 0x13FA646A: ??? ==549290== by 0xF8C2F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==549290== by 0xF89EB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==549290== by 0xF84FCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==549290== by 0xF77CEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==549290== by 0x13F94F03: ??? ==549290== by 0xF7B14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==549290== by 0xBAC0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==549290== by 0xBA59D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==549290== by 0xA750D38: PetscInitialize (pinit.c:924) ==549290== by 0x9CA8153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==549290== by 0x9CA81A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==549290== by 0x12BA62: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==549290== by 0x12622D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==549290== by 0x128E32: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==549290== by 0x128CD2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==549290== by 0x129369: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==549290== by 0x124655: main (TestMonodomainPurkinjeProblem.cpp:19) ==549290== ==549290== Open file descriptor 19: /dev/nvidiactl ==549290== at 0xA3C77A4: open (open64.c:41) ==549290== by 0x163CB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549290== by 0x163D08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549290== by 0x1621A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549290== by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549290== by 0xF271023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==549290== by 0xF271FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==549290== by 0x13FA646A: ??? ==549290== by 0xF8C2F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==549290== by 0xF89EB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==549290== by 0xF84FCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==549290== by 0xF77CEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==549290== by 0x13F94F03: ??? ==549290== by 0xF7B14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==549290== by 0xBAC0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==549290== by 0xBA59D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==549290== by 0xA750D38: PetscInitialize (pinit.c:924) ==549290== by 0x9CA8153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==549290== by 0x9CA81A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==549290== by 0x12BA62: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==549290== by 0x12622D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==549290== by 0x128E32: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==549290== by 0x128CD2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==549290== by 0x129369: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==549290== by 0x124655: main (TestMonodomainPurkinjeProblem.cpp:19) ==549290== ==549290== Open file descriptor 12: ==549290== at 0xA3C826D: pipe (pipe.c:29) ==549290== by 0x13F9407D: ??? ==549290== by 0xF7B14CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==549290== by 0xBAC0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==549290== by 0xBA59D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==549290== by 0xA750D38: PetscInitialize (pinit.c:924) ==549290== by 0x9CA8153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==549290== by 0x9CA81A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==549290== by 0x12BA62: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==549290== by 0x12622D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==549290== by 0x128E32: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==549290== by 0x128CD2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==549290== by 0x129369: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==549290== by 0x124655: main (TestMonodomainPurkinjeProblem.cpp:19) ==549290== ==549290== Open file descriptor 8: /dev/shm/open_mpi.0000 ==549290== at 0xA3CCC0C: __open_nocancel (open64_nocancel.c:39) ==549290== by 0xA350BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==549290== by 0x9CDC822: ??? ==549290== by 0x9CDC96F: ??? ==549290== by 0xF8566DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==549290== by 0xF856938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==549290== by 0xF80C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==549290== by 0xF7B12DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==549290== by 0xBAC0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==549290== by 0xBA59D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==549290== by 0xA750D38: PetscInitialize (pinit.c:924) ==549290== by 0x9CA8153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==549290== by 0x9CA81A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==549290== by 0x12BA62: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==549290== by 0x12622D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==549290== by 0x128E32: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==549290== by 0x128CD2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==549290== by 0x129369: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==549290== by 0x124655: main (TestMonodomainPurkinjeProblem.cpp:19) ==549290== ==549290== Open file descriptor 115: ==549290== ==549290== ==549290== Open file descriptor 112: ==549290== ==549290== ==549290== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainPurkinjeProblem_valgrind.txt ==549290== ==549290== ==549290== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==549290== ==549290== ==549290== ==549290== HEAP SUMMARY: ==549290== in use at exit: 1,876,295 bytes in 11,744 blocks ==549290== total heap usage: 1,159,294 allocs, 1,147,550 frees, 2,775,242,299 bytes allocated ==549290== ==549290== LEAK SUMMARY: ==549290== definitely lost: 0 bytes in 0 blocks ==549290== indirectly lost: 0 bytes in 0 blocks ==549290== possibly lost: 0 bytes in 0 blocks ==549290== still reachable: 24 bytes in 2 blocks ==549290== suppressed: 1,876,271 bytes in 11,742 blocks ==549290== Reachable blocks (those to which a pointer was found) are not shown. ==549290== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==549290== ==549290== For lists of detected and suppressed errors, rerun with: -s ==549290== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 82 from 50)