==547421== Memcheck, a memory error detector ==547421== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==547421== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==547421== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestSimpleImpedanceProblem -malloc_debug -malloc_dump -memory_info ==547421== Parent PID: 531165 ==547421== ==547421== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==547421== This could cause spurious value errors to appear. ==547421== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==547421== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==547421== This could cause spurious value errors to appear. ==547421== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==547421== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==547421== This could cause spurious value errors to appear. ==547421== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==547421== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==547421== This could cause spurious value errors to appear. ==547421== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==547421== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==547421== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==547421== Warning: set address range perms: large range [0x1391f000, 0x3391e000) (noaccess) ==547421== ==547421== FILE DESCRIPTORS: 14 open (3 std) at exit. ==547421== Open file descriptor 23: /dev/nvidia0 ==547421== at 0x69E67A4: open (open64.c:41) ==547421== by 0x129CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547421== by 0x129CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547421== by 0x12A66B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547421== by 0x12954026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547421== by 0x1295D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547421== by 0x129D5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547421== by 0x12A5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547421== by 0x1281A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547421== by 0x127648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547421== by 0x91EC023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==547421== by 0x91ECFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==547421== by 0x1042346A: ??? ==547421== by 0xBDA5F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==547421== by 0xBD81B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==547421== by 0xBD32CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==547421== by 0xBC5FEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==547421== by 0x10411F03: ??? ==547421== by 0xBC944CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==547421== by 0x7F61418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==547421== by 0x7EFAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==547421== by 0x6BF1D38: PetscInitialize (pinit.c:924) ==547421== by 0x62E3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==547421== by 0x62E31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==547421== by 0x11B118: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==547421== by 0x1166AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==547421== by 0x119176: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==547421== by 0x119016: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==547421== by 0x1196AD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==547421== by 0x114AD5: main (TestSimpleImpedanceProblem.cpp:19) ==547421== ==547421== Open file descriptor 22: /dev/nvidia0 ==547421== at 0x69E67A4: open (open64.c:41) ==547421== by 0x129CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547421== by 0x129CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547421== by 0x1295407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547421== by 0x1295D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547421== by 0x129D5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547421== by 0x12A5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547421== by 0x1281A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547421== by 0x127648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547421== by 0x91EC023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==547421== by 0x91ECFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==547421== by 0x1042346A: ??? ==547421== by 0xBDA5F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==547421== by 0xBD81B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==547421== by 0xBD32CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==547421== by 0xBC5FEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==547421== by 0x10411F03: ??? ==547421== by 0xBC944CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==547421== by 0x7F61418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==547421== by 0x7EFAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==547421== by 0x6BF1D38: PetscInitialize (pinit.c:924) ==547421== by 0x62E3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==547421== by 0x62E31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==547421== by 0x11B118: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==547421== by 0x1166AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==547421== by 0x119176: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==547421== by 0x119016: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==547421== by 0x1196AD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==547421== by 0x114AD5: main (TestSimpleImpedanceProblem.cpp:19) ==547421== ==547421== Open file descriptor 21: /dev/nvidia0 ==547421== at 0x69E67A4: open (open64.c:41) ==547421== by 0x129CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547421== by 0x129CC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547421== by 0x1295DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547421== by 0x129D54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547421== by 0x12A5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547421== by 0x1281A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547421== by 0x127648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547421== by 0x91EC023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==547421== by 0x91ECFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==547421== by 0x1042346A: ??? ==547421== by 0xBDA5F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==547421== by 0xBD81B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==547421== by 0xBD32CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==547421== by 0xBC5FEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==547421== by 0x10411F03: ??? ==547421== by 0xBC944CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==547421== by 0x7F61418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==547421== by 0x7EFAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==547421== by 0x6BF1D38: PetscInitialize (pinit.c:924) ==547421== by 0x62E3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==547421== by 0x62E31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==547421== by 0x11B118: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==547421== by 0x1166AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==547421== by 0x119176: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==547421== by 0x119016: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==547421== by 0x1196AD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==547421== by 0x114AD5: main (TestSimpleImpedanceProblem.cpp:19) ==547421== ==547421== Open file descriptor 20: /dev/nvidia-uvm ==547421== at 0x69E67A4: open (open64.c:41) ==547421== by 0x12836F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547421== by 0x1281A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547421== by 0x127648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547421== by 0x91EC023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==547421== by 0x91ECFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==547421== by 0x1042346A: ??? ==547421== by 0xBDA5F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==547421== by 0xBD81B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==547421== by 0xBD32CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==547421== by 0xBC5FEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==547421== by 0x10411F03: ??? ==547421== by 0xBC944CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==547421== by 0x7F61418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==547421== by 0x7EFAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==547421== by 0x6BF1D38: PetscInitialize (pinit.c:924) ==547421== by 0x62E3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==547421== by 0x62E31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==547421== by 0x11B118: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==547421== by 0x1166AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==547421== by 0x119176: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==547421== by 0x119016: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==547421== by 0x1196AD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==547421== by 0x114AD5: main (TestSimpleImpedanceProblem.cpp:19) ==547421== ==547421== Open file descriptor 19: /dev/nvidiactl ==547421== at 0x69E67A4: open (open64.c:41) ==547421== by 0x129CB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547421== by 0x129D08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547421== by 0x1281A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547421== by 0x127648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==547421== by 0x91EC023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==547421== by 0x91ECFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==547421== by 0x1042346A: ??? ==547421== by 0xBDA5F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==547421== by 0xBD81B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==547421== by 0xBD32CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==547421== by 0xBC5FEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==547421== by 0x10411F03: ??? ==547421== by 0xBC944CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==547421== by 0x7F61418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==547421== by 0x7EFAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==547421== by 0x6BF1D38: PetscInitialize (pinit.c:924) ==547421== by 0x62E3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==547421== by 0x62E31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==547421== by 0x11B118: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==547421== by 0x1166AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==547421== by 0x119176: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==547421== by 0x119016: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==547421== by 0x1196AD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==547421== by 0x114AD5: main (TestSimpleImpedanceProblem.cpp:19) ==547421== ==547421== Open file descriptor 12: ==547421== at 0x69E726D: pipe (pipe.c:29) ==547421== by 0x1041107D: ??? ==547421== by 0xBC944CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==547421== by 0x7F61418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==547421== by 0x7EFAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==547421== by 0x6BF1D38: PetscInitialize (pinit.c:924) ==547421== by 0x62E3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==547421== by 0x62E31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==547421== by 0x11B118: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==547421== by 0x1166AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==547421== by 0x119176: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==547421== by 0x119016: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==547421== by 0x1196AD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==547421== by 0x114AD5: main (TestSimpleImpedanceProblem.cpp:19) ==547421== ==547421== Open file descriptor 8: /dev/shm/open_mpi.0000 ==547421== at 0x69EBC0C: __open_nocancel (open64_nocancel.c:39) ==547421== by 0x696FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==547421== by 0x6317822: ??? ==547421== by 0x631796F: ??? ==547421== by 0xBD396DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==547421== by 0xBD39938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==547421== by 0xBCEF922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==547421== by 0xBC942DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==547421== by 0x7F61418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==547421== by 0x7EFAD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==547421== by 0x6BF1D38: PetscInitialize (pinit.c:924) ==547421== by 0x62E3153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==547421== by 0x62E31A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==547421== by 0x11B118: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==547421== by 0x1166AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==547421== by 0x119176: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==547421== by 0x119016: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==547421== by 0x1196AD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==547421== by 0x114AD5: main (TestSimpleImpedanceProblem.cpp:19) ==547421== ==547421== Open file descriptor 115: ==547421== ==547421== ==547421== Open file descriptor 112: ==547421== ==547421== ==547421== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimpleImpedanceProblem_valgrind.txt ==547421== ==547421== ==547421== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==547421== ==547421== ==547421== ==547421== HEAP SUMMARY: ==547421== in use at exit: 1,875,715 bytes in 11,734 blocks ==547421== total heap usage: 7,113,710 allocs, 7,101,976 frees, 1,795,994,452 bytes allocated ==547421== ==547421== LEAK SUMMARY: ==547421== definitely lost: 0 bytes in 0 blocks ==547421== indirectly lost: 0 bytes in 0 blocks ==547421== possibly lost: 0 bytes in 0 blocks ==547421== still reachable: 24 bytes in 2 blocks ==547421== suppressed: 1,875,691 bytes in 11,732 blocks ==547421== Reachable blocks (those to which a pointer was found) are not shown. ==547421== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==547421== ==547421== For lists of detected and suppressed errors, rerun with: -s ==547421== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 46 from 46)