==546925== Memcheck, a memory error detector ==546925== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==546925== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==546925== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestSloughingCellKillers -malloc_debug -malloc_dump -memory_info ==546925== Parent PID: 531165 ==546925== ==546925== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==546925== This could cause spurious value errors to appear. ==546925== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==546925== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==546925== This could cause spurious value errors to appear. ==546925== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==546925== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==546925== This could cause spurious value errors to appear. ==546925== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==546925== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==546925== This could cause spurious value errors to appear. ==546925== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==546925== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==546925== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==546925== Warning: set address range perms: large range [0x1db1f000, 0x3db1e000) (noaccess) ==546925== ==546925== FILE DESCRIPTORS: 14 open (3 std) at exit. ==546925== Open file descriptor 23: /dev/nvidia0 ==546925== at 0x11A127A4: open (open64.c:41) ==546925== by 0x1CBCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==546925== by 0x1CBCD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==546925== by 0x1CC66B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==546925== by 0x1CB54026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==546925== by 0x1CB5D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==546925== by 0x1CBD5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==546925== by 0x1CC5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==546925== by 0x1CA1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==546925== by 0x1C9648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==546925== by 0x15312023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==546925== by 0x15312FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==546925== by 0x1A6F246A: ??? ==546925== by 0x15963F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==546925== by 0x1593FB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==546925== by 0x158F0CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==546925== by 0x1581DEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==546925== by 0x1A6E0F03: ??? ==546925== by 0x158524CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==546925== by 0x11234418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==546925== by 0x111CDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==546925== by 0xFEC4D38: PetscInitialize (pinit.c:924) ==546925== by 0xFD2F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==546925== by 0xFD2F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==546925== by 0x157559: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==546925== by 0x14FA79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==546925== by 0x152B30: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==546925== by 0x1529D0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==546925== by 0x153067: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==546925== by 0x14DE95: main (TestSloughingCellKillers.cpp:19) ==546925== ==546925== Open file descriptor 22: /dev/nvidia0 ==546925== at 0x11A127A4: open (open64.c:41) ==546925== by 0x1CBCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==546925== by 0x1CBCD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==546925== by 0x1CB5407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==546925== by 0x1CB5D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==546925== by 0x1CBD5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==546925== by 0x1CC5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==546925== by 0x1CA1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==546925== by 0x1C9648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==546925== by 0x15312023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==546925== by 0x15312FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==546925== by 0x1A6F246A: ??? ==546925== by 0x15963F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==546925== by 0x1593FB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==546925== by 0x158F0CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==546925== by 0x1581DEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==546925== by 0x1A6E0F03: ??? ==546925== by 0x158524CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==546925== by 0x11234418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==546925== by 0x111CDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==546925== by 0xFEC4D38: PetscInitialize (pinit.c:924) ==546925== by 0xFD2F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==546925== by 0xFD2F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==546925== by 0x157559: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==546925== by 0x14FA79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==546925== by 0x152B30: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==546925== by 0x1529D0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==546925== by 0x153067: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==546925== by 0x14DE95: main (TestSloughingCellKillers.cpp:19) ==546925== ==546925== Open file descriptor 21: /dev/nvidia0 ==546925== at 0x11A127A4: open (open64.c:41) ==546925== by 0x1CBCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==546925== by 0x1CBCC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==546925== by 0x1CB5DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==546925== by 0x1CBD54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==546925== by 0x1CC5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==546925== by 0x1CA1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==546925== by 0x1C9648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==546925== by 0x15312023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==546925== by 0x15312FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==546925== by 0x1A6F246A: ??? ==546925== by 0x15963F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==546925== by 0x1593FB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==546925== by 0x158F0CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==546925== by 0x1581DEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==546925== by 0x1A6E0F03: ??? ==546925== by 0x158524CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==546925== by 0x11234418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==546925== by 0x111CDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==546925== by 0xFEC4D38: PetscInitialize (pinit.c:924) ==546925== by 0xFD2F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==546925== by 0xFD2F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==546925== by 0x157559: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==546925== by 0x14FA79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==546925== by 0x152B30: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==546925== by 0x1529D0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==546925== by 0x153067: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==546925== by 0x14DE95: main (TestSloughingCellKillers.cpp:19) ==546925== ==546925== Open file descriptor 20: /dev/nvidia-uvm ==546925== at 0x11A127A4: open (open64.c:41) ==546925== by 0x1CA36F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==546925== by 0x1CA1A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==546925== by 0x1C9648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==546925== by 0x15312023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==546925== by 0x15312FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==546925== by 0x1A6F246A: ??? ==546925== by 0x15963F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==546925== by 0x1593FB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==546925== by 0x158F0CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==546925== by 0x1581DEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==546925== by 0x1A6E0F03: ??? ==546925== by 0x158524CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==546925== by 0x11234418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==546925== by 0x111CDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==546925== by 0xFEC4D38: PetscInitialize (pinit.c:924) ==546925== by 0xFD2F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==546925== by 0xFD2F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==546925== by 0x157559: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==546925== by 0x14FA79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==546925== by 0x152B30: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==546925== by 0x1529D0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==546925== by 0x153067: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==546925== by 0x14DE95: main (TestSloughingCellKillers.cpp:19) ==546925== ==546925== Open file descriptor 19: /dev/nvidiactl ==546925== at 0x11A127A4: open (open64.c:41) ==546925== by 0x1CBCB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==546925== by 0x1CBD08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==546925== by 0x1CA1A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==546925== by 0x1C9648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==546925== by 0x15312023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==546925== by 0x15312FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==546925== by 0x1A6F246A: ??? ==546925== by 0x15963F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==546925== by 0x1593FB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==546925== by 0x158F0CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==546925== by 0x1581DEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==546925== by 0x1A6E0F03: ??? ==546925== by 0x158524CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==546925== by 0x11234418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==546925== by 0x111CDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==546925== by 0xFEC4D38: PetscInitialize (pinit.c:924) ==546925== by 0xFD2F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==546925== by 0xFD2F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==546925== by 0x157559: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==546925== by 0x14FA79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==546925== by 0x152B30: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==546925== by 0x1529D0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==546925== by 0x153067: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==546925== by 0x14DE95: main (TestSloughingCellKillers.cpp:19) ==546925== ==546925== Open file descriptor 12: ==546925== at 0x11A1326D: pipe (pipe.c:29) ==546925== by 0x1A6E007D: ??? ==546925== by 0x158524CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==546925== by 0x11234418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==546925== by 0x111CDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==546925== by 0xFEC4D38: PetscInitialize (pinit.c:924) ==546925== by 0xFD2F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==546925== by 0xFD2F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==546925== by 0x157559: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==546925== by 0x14FA79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==546925== by 0x152B30: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==546925== by 0x1529D0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==546925== by 0x153067: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==546925== by 0x14DE95: main (TestSloughingCellKillers.cpp:19) ==546925== ==546925== Open file descriptor 8: /dev/shm/open_mpi.0000 ==546925== at 0x11A17C0C: __open_nocancel (open64_nocancel.c:39) ==546925== by 0x1199BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==546925== by 0xFD63822: ??? ==546925== by 0xFD6396F: ??? ==546925== by 0x158F76DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==546925== by 0x158F7938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==546925== by 0x158AD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==546925== by 0x158522DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==546925== by 0x11234418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==546925== by 0x111CDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==546925== by 0xFEC4D38: PetscInitialize (pinit.c:924) ==546925== by 0xFD2F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==546925== by 0xFD2F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==546925== by 0x157559: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==546925== by 0x14FA79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==546925== by 0x152B30: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==546925== by 0x1529D0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==546925== by 0x153067: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==546925== by 0x14DE95: main (TestSloughingCellKillers.cpp:19) ==546925== ==546925== Open file descriptor 115: ==546925== ==546925== ==546925== Open file descriptor 112: ==546925== ==546925== ==546925== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSloughingCellKillers_valgrind.txt ==546925== ==546925== ==546925== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==546925== ==546925== ==546925== ==546925== HEAP SUMMARY: ==546925== in use at exit: 1,875,964 bytes in 11,739 blocks ==546925== total heap usage: 108,649 allocs, 96,910 frees, 1,537,050,301 bytes allocated ==546925== ==546925== LEAK SUMMARY: ==546925== definitely lost: 0 bytes in 0 blocks ==546925== indirectly lost: 0 bytes in 0 blocks ==546925== possibly lost: 0 bytes in 0 blocks ==546925== still reachable: 56 bytes in 3 blocks ==546925== suppressed: 1,875,908 bytes in 11,736 blocks ==546925== Reachable blocks (those to which a pointer was found) are not shown. ==546925== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==546925== ==546925== For lists of detected and suppressed errors, rerun with: -s ==546925== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 53 from 53)