==549461== Memcheck, a memory error detector ==549461== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==549461== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==549461== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestStimulusBoundaryCondition -malloc_debug -malloc_dump -memory_info ==549461== Parent PID: 531165 ==549461== ==549461== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==549461== This could cause spurious value errors to appear. ==549461== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==549461== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==549461== This could cause spurious value errors to appear. ==549461== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==549461== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==549461== This could cause spurious value errors to appear. ==549461== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==549461== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==549461== This could cause spurious value errors to appear. ==549461== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==549461== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==549461== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==549461== Warning: set address range perms: large range [0x1732e000, 0x3732d000) (noaccess) ==549461== ==549461== FILE DESCRIPTORS: 14 open (3 std) at exit. ==549461== Open file descriptor 23: /dev/nvidia0 ==549461== at 0xA1DA7A4: open (open64.c:41) ==549461== by 0x163CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549461== by 0x163CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549461== by 0x16466B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549461== by 0x16354026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549461== by 0x1635D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549461== by 0x163D5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549461== by 0x1645FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549461== by 0x1621A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549461== by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549461== by 0xF223023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==549461== by 0xF223FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==549461== by 0x13FA746A: ??? ==549461== by 0xF874F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==549461== by 0xF850B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==549461== by 0xF801CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==549461== by 0xF72EEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==549461== by 0x13F95F03: ??? ==549461== by 0xF7634CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==549461== by 0xB8D5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==549461== by 0xB86ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==549461== by 0xA565D38: PetscInitialize (pinit.c:924) ==549461== by 0x9E02153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==549461== by 0x9E021A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==549461== by 0x111E4E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==549461== by 0x10DC13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==549461== by 0x10FF02: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==549461== by 0x10FDFD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==549461== by 0x110411: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==549461== by 0x10C415: main (TestStimulusBoundaryCondition.cpp:18) ==549461== ==549461== Open file descriptor 22: /dev/nvidia0 ==549461== at 0xA1DA7A4: open (open64.c:41) ==549461== by 0x163CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549461== by 0x163CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549461== by 0x1635407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549461== by 0x1635D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549461== by 0x163D5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549461== by 0x1645FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549461== by 0x1621A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549461== by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549461== by 0xF223023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==549461== by 0xF223FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==549461== by 0x13FA746A: ??? ==549461== by 0xF874F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==549461== by 0xF850B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==549461== by 0xF801CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==549461== by 0xF72EEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==549461== by 0x13F95F03: ??? ==549461== by 0xF7634CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==549461== by 0xB8D5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==549461== by 0xB86ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==549461== by 0xA565D38: PetscInitialize (pinit.c:924) ==549461== by 0x9E02153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==549461== by 0x9E021A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==549461== by 0x111E4E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==549461== by 0x10DC13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==549461== by 0x10FF02: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==549461== by 0x10FDFD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==549461== by 0x110411: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==549461== by 0x10C415: main (TestStimulusBoundaryCondition.cpp:18) ==549461== ==549461== Open file descriptor 21: /dev/nvidia0 ==549461== at 0xA1DA7A4: open (open64.c:41) ==549461== by 0x163CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549461== by 0x163CC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549461== by 0x1635DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549461== by 0x163D54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549461== by 0x1645FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549461== by 0x1621A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549461== by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549461== by 0xF223023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==549461== by 0xF223FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==549461== by 0x13FA746A: ??? ==549461== by 0xF874F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==549461== by 0xF850B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==549461== by 0xF801CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==549461== by 0xF72EEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==549461== by 0x13F95F03: ??? ==549461== by 0xF7634CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==549461== by 0xB8D5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==549461== by 0xB86ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==549461== by 0xA565D38: PetscInitialize (pinit.c:924) ==549461== by 0x9E02153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==549461== by 0x9E021A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==549461== by 0x111E4E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==549461== by 0x10DC13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==549461== by 0x10FF02: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==549461== by 0x10FDFD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==549461== by 0x110411: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==549461== by 0x10C415: main (TestStimulusBoundaryCondition.cpp:18) ==549461== ==549461== Open file descriptor 20: /dev/nvidia-uvm ==549461== at 0xA1DA7A4: open (open64.c:41) ==549461== by 0x16236F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549461== by 0x1621A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549461== by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549461== by 0xF223023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==549461== by 0xF223FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==549461== by 0x13FA746A: ??? ==549461== by 0xF874F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==549461== by 0xF850B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==549461== by 0xF801CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==549461== by 0xF72EEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==549461== by 0x13F95F03: ??? ==549461== by 0xF7634CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==549461== by 0xB8D5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==549461== by 0xB86ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==549461== by 0xA565D38: PetscInitialize (pinit.c:924) ==549461== by 0x9E02153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==549461== by 0x9E021A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==549461== by 0x111E4E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==549461== by 0x10DC13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==549461== by 0x10FF02: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==549461== by 0x10FDFD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==549461== by 0x110411: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==549461== by 0x10C415: main (TestStimulusBoundaryCondition.cpp:18) ==549461== ==549461== Open file descriptor 19: /dev/nvidiactl ==549461== at 0xA1DA7A4: open (open64.c:41) ==549461== by 0x163CB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549461== by 0x163D08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549461== by 0x1621A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549461== by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==549461== by 0xF223023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==549461== by 0xF223FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==549461== by 0x13FA746A: ??? ==549461== by 0xF874F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==549461== by 0xF850B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==549461== by 0xF801CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==549461== by 0xF72EEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==549461== by 0x13F95F03: ??? ==549461== by 0xF7634CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==549461== by 0xB8D5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==549461== by 0xB86ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==549461== by 0xA565D38: PetscInitialize (pinit.c:924) ==549461== by 0x9E02153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==549461== by 0x9E021A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==549461== by 0x111E4E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==549461== by 0x10DC13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==549461== by 0x10FF02: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==549461== by 0x10FDFD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==549461== by 0x110411: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==549461== by 0x10C415: main (TestStimulusBoundaryCondition.cpp:18) ==549461== ==549461== Open file descriptor 12: ==549461== at 0xA1DB26D: pipe (pipe.c:29) ==549461== by 0x13F9507D: ??? ==549461== by 0xF7634CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==549461== by 0xB8D5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==549461== by 0xB86ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==549461== by 0xA565D38: PetscInitialize (pinit.c:924) ==549461== by 0x9E02153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==549461== by 0x9E021A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==549461== by 0x111E4E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==549461== by 0x10DC13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==549461== by 0x10FF02: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==549461== by 0x10FDFD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==549461== by 0x110411: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==549461== by 0x10C415: main (TestStimulusBoundaryCondition.cpp:18) ==549461== ==549461== Open file descriptor 8: /dev/shm/open_mpi.0000 ==549461== at 0xA1DFC0C: __open_nocancel (open64_nocancel.c:39) ==549461== by 0xA163BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==549461== by 0x9E36822: ??? ==549461== by 0x9E3696F: ??? ==549461== by 0xF8086DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==549461== by 0xF808938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==549461== by 0xF7BE922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==549461== by 0xF7632DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==549461== by 0xB8D5418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==549461== by 0xB86ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==549461== by 0xA565D38: PetscInitialize (pinit.c:924) ==549461== by 0x9E02153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==549461== by 0x9E021A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==549461== by 0x111E4E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==549461== by 0x10DC13: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==549461== by 0x10FF02: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==549461== by 0x10FDFD: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==549461== by 0x110411: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==549461== by 0x10C415: main (TestStimulusBoundaryCondition.cpp:18) ==549461== ==549461== Open file descriptor 115: ==549461== ==549461== ==549461== Open file descriptor 112: ==549461== ==549461== ==549461== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestStimulusBoundaryCondition_valgrind.txt ==549461== ==549461== ==549461== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==549461== ==549461== ==549461== ==549461== HEAP SUMMARY: ==549461== in use at exit: 1,875,921 bytes in 11,738 blocks ==549461== total heap usage: 57,175 allocs, 45,437 frees, 1,533,134,717 bytes allocated ==549461== ==549461== LEAK SUMMARY: ==549461== definitely lost: 0 bytes in 0 blocks ==549461== indirectly lost: 0 bytes in 0 blocks ==549461== possibly lost: 0 bytes in 0 blocks ==549461== still reachable: 24 bytes in 2 blocks ==549461== suppressed: 1,875,897 bytes in 11,736 blocks ==549461== Reachable blocks (those to which a pointer was found) are not shown. ==549461== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==549461== ==549461== For lists of detected and suppressed errors, rerun with: -s ==549461== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 53 from 53)