==532912== Memcheck, a memory error detector ==532912== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==532912== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==532912== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestT2SwapCellKiller -malloc_debug -malloc_dump -memory_info ==532912== Parent PID: 531165 ==532912== ==532912== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==532912== This could cause spurious value errors to appear. ==532912== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==532912== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==532912== This could cause spurious value errors to appear. ==532912== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==532912== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==532912== This could cause spurious value errors to appear. ==532912== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==532912== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==532912== This could cause spurious value errors to appear. ==532912== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==532912== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==532912== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==532912== Warning: set address range perms: large range [0x1bf1f000, 0x3bf1e000) (noaccess) ==532912== ==532912== FILE DESCRIPTORS: 14 open (3 std) at exit. ==532912== Open file descriptor 23: /dev/nvidia0 ==532912== at 0x1006B7A4: open (open64.c:41) ==532912== by 0x1AFCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==532912== by 0x1AFCD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==532912== by 0x1B066B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==532912== by 0x1AF54026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==532912== by 0x1AF5D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==532912== by 0x1AFD5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==532912== by 0x1B05FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==532912== by 0x1AE1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==532912== by 0x1AD648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==532912== by 0x13A4B023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==532912== by 0x13A4BFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==532912== by 0x18A3246A: ??? ==532912== by 0x140A0F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==532912== by 0x1407CB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==532912== by 0x1402BCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==532912== by 0x13F58EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==532912== by 0x18A20F03: ??? ==532912== by 0x13F8D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==532912== by 0xF974418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==532912== by 0xF90DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==532912== by 0xE604D38: PetscInitialize (pinit.c:924) ==532912== by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==532912== by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==532912== by 0x149A6D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==532912== by 0x142699: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==532912== by 0x1454C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==532912== by 0x145364: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==532912== by 0x1459FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==532912== by 0x140AB5: main (TestT2SwapCellKiller.cpp:19) ==532912== ==532912== Open file descriptor 22: /dev/nvidia0 ==532912== at 0x1006B7A4: open (open64.c:41) ==532912== by 0x1AFCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==532912== by 0x1AFCD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==532912== by 0x1AF5407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==532912== by 0x1AF5D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==532912== by 0x1AFD5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==532912== by 0x1B05FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==532912== by 0x1AE1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==532912== by 0x1AD648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==532912== by 0x13A4B023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==532912== by 0x13A4BFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==532912== by 0x18A3246A: ??? ==532912== by 0x140A0F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==532912== by 0x1407CB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==532912== by 0x1402BCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==532912== by 0x13F58EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==532912== by 0x18A20F03: ??? ==532912== by 0x13F8D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==532912== by 0xF974418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==532912== by 0xF90DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==532912== by 0xE604D38: PetscInitialize (pinit.c:924) ==532912== by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==532912== by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==532912== by 0x149A6D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==532912== by 0x142699: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==532912== by 0x1454C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==532912== by 0x145364: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==532912== by 0x1459FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==532912== by 0x140AB5: main (TestT2SwapCellKiller.cpp:19) ==532912== ==532912== Open file descriptor 21: /dev/nvidia0 ==532912== at 0x1006B7A4: open (open64.c:41) ==532912== by 0x1AFCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==532912== by 0x1AFCC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==532912== by 0x1AF5DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==532912== by 0x1AFD54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==532912== by 0x1B05FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==532912== by 0x1AE1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==532912== by 0x1AD648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==532912== by 0x13A4B023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==532912== by 0x13A4BFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==532912== by 0x18A3246A: ??? ==532912== by 0x140A0F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==532912== by 0x1407CB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==532912== by 0x1402BCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==532912== by 0x13F58EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==532912== by 0x18A20F03: ??? ==532912== by 0x13F8D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==532912== by 0xF974418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==532912== by 0xF90DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==532912== by 0xE604D38: PetscInitialize (pinit.c:924) ==532912== by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==532912== by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==532912== by 0x149A6D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==532912== by 0x142699: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==532912== by 0x1454C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==532912== by 0x145364: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==532912== by 0x1459FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==532912== by 0x140AB5: main (TestT2SwapCellKiller.cpp:19) ==532912== ==532912== Open file descriptor 20: /dev/nvidia-uvm ==532912== at 0x1006B7A4: open (open64.c:41) ==532912== by 0x1AE36F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==532912== by 0x1AE1A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==532912== by 0x1AD648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==532912== by 0x13A4B023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==532912== by 0x13A4BFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==532912== by 0x18A3246A: ??? ==532912== by 0x140A0F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==532912== by 0x1407CB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==532912== by 0x1402BCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==532912== by 0x13F58EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==532912== by 0x18A20F03: ??? ==532912== by 0x13F8D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==532912== by 0xF974418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==532912== by 0xF90DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==532912== by 0xE604D38: PetscInitialize (pinit.c:924) ==532912== by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==532912== by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==532912== by 0x149A6D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==532912== by 0x142699: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==532912== by 0x1454C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==532912== by 0x145364: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==532912== by 0x1459FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==532912== by 0x140AB5: main (TestT2SwapCellKiller.cpp:19) ==532912== ==532912== Open file descriptor 19: /dev/nvidiactl ==532912== at 0x1006B7A4: open (open64.c:41) ==532912== by 0x1AFCB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==532912== by 0x1AFD08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==532912== by 0x1AE1A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==532912== by 0x1AD648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==532912== by 0x13A4B023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==532912== by 0x13A4BFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==532912== by 0x18A3246A: ??? ==532912== by 0x140A0F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==532912== by 0x1407CB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==532912== by 0x1402BCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==532912== by 0x13F58EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==532912== by 0x18A20F03: ??? ==532912== by 0x13F8D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==532912== by 0xF974418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==532912== by 0xF90DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==532912== by 0xE604D38: PetscInitialize (pinit.c:924) ==532912== by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==532912== by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==532912== by 0x149A6D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==532912== by 0x142699: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==532912== by 0x1454C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==532912== by 0x145364: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==532912== by 0x1459FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==532912== by 0x140AB5: main (TestT2SwapCellKiller.cpp:19) ==532912== ==532912== Open file descriptor 12: ==532912== at 0x1006C26D: pipe (pipe.c:29) ==532912== by 0x18A2007D: ??? ==532912== by 0x13F8D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==532912== by 0xF974418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==532912== by 0xF90DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==532912== by 0xE604D38: PetscInitialize (pinit.c:924) ==532912== by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==532912== by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==532912== by 0x149A6D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==532912== by 0x142699: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==532912== by 0x1454C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==532912== by 0x145364: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==532912== by 0x1459FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==532912== by 0x140AB5: main (TestT2SwapCellKiller.cpp:19) ==532912== ==532912== Open file descriptor 8: /dev/shm/open_mpi.0000 ==532912== at 0x10070C0C: __open_nocancel (open64_nocancel.c:39) ==532912== by 0xFFF4BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==532912== by 0xE4A3822: ??? ==532912== by 0xE4A396F: ??? ==532912== by 0x140326DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==532912== by 0x14032938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==532912== by 0x13FE8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==532912== by 0x13F8D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==532912== by 0xF974418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==532912== by 0xF90DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==532912== by 0xE604D38: PetscInitialize (pinit.c:924) ==532912== by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==532912== by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==532912== by 0x149A6D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==532912== by 0x142699: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==532912== by 0x1454C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==532912== by 0x145364: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==532912== by 0x1459FB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==532912== by 0x140AB5: main (TestT2SwapCellKiller.cpp:19) ==532912== ==532912== Open file descriptor 115: ==532912== ==532912== ==532912== Open file descriptor 112: ==532912== ==532912== ==532912== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestT2SwapCellKiller_valgrind.txt ==532912== ==532912== ==532912== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==532912== ==532912== ==532912== ==532912== HEAP SUMMARY: ==532912== in use at exit: 1,875,965 bytes in 11,739 blocks ==532912== total heap usage: 86,871 allocs, 75,132 frees, 1,538,411,306 bytes allocated ==532912== ==532912== LEAK SUMMARY: ==532912== definitely lost: 0 bytes in 0 blocks ==532912== indirectly lost: 0 bytes in 0 blocks ==532912== possibly lost: 0 bytes in 0 blocks ==532912== still reachable: 56 bytes in 3 blocks ==532912== suppressed: 1,875,909 bytes in 11,736 blocks ==532912== Reachable blocks (those to which a pointer was found) are not shown. ==532912== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==532912== ==532912== For lists of detected and suppressed errors, rerun with: -s ==532912== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 53 from 53)