==607411== Memcheck, a memory error detector ==607411== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==607411== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==607411== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCellForCrypt -malloc_debug -malloc_dump -memory_info ==607411== Parent PID: 591878 ==607411== ==607411== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==607411== This could cause spurious value errors to appear. ==607411== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==607411== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==607411== This could cause spurious value errors to appear. ==607411== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==607411== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==607411== This could cause spurious value errors to appear. ==607411== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==607411== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==607411== This could cause spurious value errors to appear. ==607411== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==607411== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==607411== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==607411== Warning: set address range perms: large range [0x1db1f000, 0x3db1e000) (noaccess) ==607411== ==607411== FILE DESCRIPTORS: 14 open (3 std) at exit. ==607411== Open file descriptor 23: /dev/nvidia0 ==607411== at 0xEB697A4: open (open64.c:41) ==607411== by 0x1CBCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607411== by 0x1CBCD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607411== by 0x1CC66B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607411== by 0x1CB54026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607411== by 0x1CB5D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607411== by 0x1CBD5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607411== by 0x1CC5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607411== by 0x1CA1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607411== by 0x1C9648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607411== by 0x123ED023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==607411== by 0x123EDFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==607411== by 0x1A6F346A: ??? ==607411== by 0x15A04F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==607411== by 0x159E0B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==607411== by 0x15991CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==607411== by 0x158BEEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==607411== by 0x1A6E1F03: ??? ==607411== by 0x158F34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==607411== by 0x121BA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==607411== by 0x12153D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==607411== by 0x10E4AD38: PetscInitialize (pinit.c:924) ==607411== by 0xE466153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==607411== by 0xE4661A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==607411== by 0x11EA7E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==607411== by 0x11A173: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==607411== by 0x11C6C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==607411== by 0x11C5C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==607411== by 0x11CBD3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==607411== by 0x118975: main (TestCellForCrypt.cpp:18) ==607411== ==607411== Open file descriptor 22: /dev/nvidia0 ==607411== at 0xEB697A4: open (open64.c:41) ==607411== by 0x1CBCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607411== by 0x1CBCD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607411== by 0x1CB5407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607411== by 0x1CB5D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607411== by 0x1CBD5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607411== by 0x1CC5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607411== by 0x1CA1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607411== by 0x1C9648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607411== by 0x123ED023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==607411== by 0x123EDFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==607411== by 0x1A6F346A: ??? ==607411== by 0x15A04F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==607411== by 0x159E0B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==607411== by 0x15991CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==607411== by 0x158BEEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==607411== by 0x1A6E1F03: ??? ==607411== by 0x158F34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==607411== by 0x121BA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==607411== by 0x12153D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==607411== by 0x10E4AD38: PetscInitialize (pinit.c:924) ==607411== by 0xE466153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==607411== by 0xE4661A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==607411== by 0x11EA7E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==607411== by 0x11A173: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==607411== by 0x11C6C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==607411== by 0x11C5C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==607411== by 0x11CBD3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==607411== by 0x118975: main (TestCellForCrypt.cpp:18) ==607411== ==607411== Open file descriptor 21: /dev/nvidia0 ==607411== at 0xEB697A4: open (open64.c:41) ==607411== by 0x1CBCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607411== by 0x1CBCC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607411== by 0x1CB5DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607411== by 0x1CBD54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607411== by 0x1CC5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607411== by 0x1CA1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607411== by 0x1C9648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607411== by 0x123ED023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==607411== by 0x123EDFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==607411== by 0x1A6F346A: ??? ==607411== by 0x15A04F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==607411== by 0x159E0B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==607411== by 0x15991CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==607411== by 0x158BEEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==607411== by 0x1A6E1F03: ??? ==607411== by 0x158F34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==607411== by 0x121BA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==607411== by 0x12153D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==607411== by 0x10E4AD38: PetscInitialize (pinit.c:924) ==607411== by 0xE466153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==607411== by 0xE4661A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==607411== by 0x11EA7E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==607411== by 0x11A173: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==607411== by 0x11C6C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==607411== by 0x11C5C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==607411== by 0x11CBD3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==607411== by 0x118975: main (TestCellForCrypt.cpp:18) ==607411== ==607411== Open file descriptor 20: /dev/nvidia-uvm ==607411== at 0xEB697A4: open (open64.c:41) ==607411== by 0x1CA36F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607411== by 0x1CA1A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607411== by 0x1C9648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607411== by 0x123ED023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==607411== by 0x123EDFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==607411== by 0x1A6F346A: ??? ==607411== by 0x15A04F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==607411== by 0x159E0B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==607411== by 0x15991CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==607411== by 0x158BEEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==607411== by 0x1A6E1F03: ??? ==607411== by 0x158F34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==607411== by 0x121BA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==607411== by 0x12153D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==607411== by 0x10E4AD38: PetscInitialize (pinit.c:924) ==607411== by 0xE466153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==607411== by 0xE4661A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==607411== by 0x11EA7E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==607411== by 0x11A173: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==607411== by 0x11C6C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==607411== by 0x11C5C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==607411== by 0x11CBD3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==607411== by 0x118975: main (TestCellForCrypt.cpp:18) ==607411== ==607411== Open file descriptor 19: /dev/nvidiactl ==607411== at 0xEB697A4: open (open64.c:41) ==607411== by 0x1CBCB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607411== by 0x1CBD08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607411== by 0x1CA1A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607411== by 0x1C9648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607411== by 0x123ED023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==607411== by 0x123EDFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==607411== by 0x1A6F346A: ??? ==607411== by 0x15A04F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==607411== by 0x159E0B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==607411== by 0x15991CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==607411== by 0x158BEEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==607411== by 0x1A6E1F03: ??? ==607411== by 0x158F34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==607411== by 0x121BA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==607411== by 0x12153D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==607411== by 0x10E4AD38: PetscInitialize (pinit.c:924) ==607411== by 0xE466153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==607411== by 0xE4661A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==607411== by 0x11EA7E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==607411== by 0x11A173: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==607411== by 0x11C6C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==607411== by 0x11C5C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==607411== by 0x11CBD3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==607411== by 0x118975: main (TestCellForCrypt.cpp:18) ==607411== ==607411== Open file descriptor 12: ==607411== at 0xEB6A26D: pipe (pipe.c:29) ==607411== by 0x1A6E107D: ??? ==607411== by 0x158F34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==607411== by 0x121BA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==607411== by 0x12153D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==607411== by 0x10E4AD38: PetscInitialize (pinit.c:924) ==607411== by 0xE466153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==607411== by 0xE4661A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==607411== by 0x11EA7E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==607411== by 0x11A173: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==607411== by 0x11C6C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==607411== by 0x11C5C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==607411== by 0x11CBD3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==607411== by 0x118975: main (TestCellForCrypt.cpp:18) ==607411== ==607411== Open file descriptor 8: /dev/shm/open_mpi.0000 ==607411== at 0xEB6EC0C: __open_nocancel (open64_nocancel.c:39) ==607411== by 0xEAF2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==607411== by 0xE49A822: ??? ==607411== by 0xE49A96F: ??? ==607411== by 0x159986DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==607411== by 0x15998938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==607411== by 0x1594E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==607411== by 0x158F32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==607411== by 0x121BA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==607411== by 0x12153D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==607411== by 0x10E4AD38: PetscInitialize (pinit.c:924) ==607411== by 0xE466153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==607411== by 0xE4661A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==607411== by 0x11EA7E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==607411== by 0x11A173: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==607411== by 0x11C6C4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==607411== by 0x11C5C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==607411== by 0x11CBD3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==607411== by 0x118975: main (TestCellForCrypt.cpp:18) ==607411== ==607411== Open file descriptor 116: ==607411== ==607411== ==607411== Open file descriptor 113: ==607411== ==607411== ==607411== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCellForCrypt_valgrind.txt ==607411== ==607411== ==607411== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==607411== ==607411== ==607411== ==607411== HEAP SUMMARY: ==607411== in use at exit: 1,876,052 bytes in 11,740 blocks ==607411== total heap usage: 63,760 allocs, 52,020 frees, 1,533,779,665 bytes allocated ==607411== ==607411== LEAK SUMMARY: ==607411== definitely lost: 0 bytes in 0 blocks ==607411== indirectly lost: 0 bytes in 0 blocks ==607411== possibly lost: 0 bytes in 0 blocks ==607411== still reachable: 184 bytes in 4 blocks ==607411== suppressed: 1,875,868 bytes in 11,736 blocks ==607411== Reachable blocks (those to which a pointer was found) are not shown. ==607411== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==607411== ==607411== For lists of detected and suppressed errors, rerun with: -s ==607411== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 53 from 53)