==608386== Memcheck, a memory error detector ==608386== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==608386== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==608386== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCvodeCells -malloc_debug -malloc_dump -memory_info ==608386== Parent PID: 591878 ==608386== ==608386== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==608386== This could cause spurious value errors to appear. ==608386== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==608386== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==608386== This could cause spurious value errors to appear. ==608386== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==608386== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==608386== This could cause spurious value errors to appear. ==608386== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==608386== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==608386== This could cause spurious value errors to appear. ==608386== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==608386== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==608386== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==608386== Warning: set address range perms: large range [0x1732e000, 0x3732d000) (noaccess) ==608386== ==608386== FILE DESCRIPTORS: 14 open (3 std) at exit. ==608386== Open file descriptor 23: /dev/nvidia0 ==608386== at 0x9D237A4: open (open64.c:41) ==608386== by 0x163CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==608386== by 0x163CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==608386== by 0x16466B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==608386== by 0x16354026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==608386== by 0x1635D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==608386== by 0x163D5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==608386== by 0x1645FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==608386== by 0x1621A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==608386== by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==608386== by 0xE553023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==608386== by 0xE553FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==608386== by 0x13FA746A: ??? ==608386== by 0xEBA8F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==608386== by 0xEB84B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==608386== by 0xEB35CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==608386== by 0xEA60EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==608386== by 0x13F95F03: ??? ==608386== by 0xEA954CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==608386== by 0x9957418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==608386== by 0x98F0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==608386== by 0x85E7D38: PetscInitialize (pinit.c:924) ==608386== by 0x8452153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==608386== by 0x84521A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==608386== by 0x1363CF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==608386== by 0x130B8B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==608386== by 0x133882: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==608386== by 0x133722: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==608386== by 0x133DB9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==608386== by 0x12BB65: main (TestCvodeCells.cpp:19) ==608386== ==608386== Open file descriptor 22: /dev/nvidia0 ==608386== at 0x9D237A4: open (open64.c:41) ==608386== by 0x163CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==608386== by 0x163CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==608386== by 0x1635407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==608386== by 0x1635D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==608386== by 0x163D5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==608386== by 0x1645FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==608386== by 0x1621A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==608386== by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==608386== by 0xE553023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==608386== by 0xE553FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==608386== by 0x13FA746A: ??? ==608386== by 0xEBA8F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==608386== by 0xEB84B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==608386== by 0xEB35CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==608386== by 0xEA60EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==608386== by 0x13F95F03: ??? ==608386== by 0xEA954CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==608386== by 0x9957418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==608386== by 0x98F0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==608386== by 0x85E7D38: PetscInitialize (pinit.c:924) ==608386== by 0x8452153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==608386== by 0x84521A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==608386== by 0x1363CF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==608386== by 0x130B8B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==608386== by 0x133882: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==608386== by 0x133722: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==608386== by 0x133DB9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==608386== by 0x12BB65: main (TestCvodeCells.cpp:19) ==608386== ==608386== Open file descriptor 21: /dev/nvidia0 ==608386== at 0x9D237A4: open (open64.c:41) ==608386== by 0x163CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==608386== by 0x163CC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==608386== by 0x1635DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==608386== by 0x163D54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==608386== by 0x1645FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==608386== by 0x1621A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==608386== by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==608386== by 0xE553023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==608386== by 0xE553FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==608386== by 0x13FA746A: ??? ==608386== by 0xEBA8F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==608386== by 0xEB84B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==608386== by 0xEB35CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==608386== by 0xEA60EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==608386== by 0x13F95F03: ??? ==608386== by 0xEA954CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==608386== by 0x9957418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==608386== by 0x98F0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==608386== by 0x85E7D38: PetscInitialize (pinit.c:924) ==608386== by 0x8452153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==608386== by 0x84521A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==608386== by 0x1363CF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==608386== by 0x130B8B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==608386== by 0x133882: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==608386== by 0x133722: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==608386== by 0x133DB9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==608386== by 0x12BB65: main (TestCvodeCells.cpp:19) ==608386== ==608386== Open file descriptor 20: /dev/nvidia-uvm ==608386== at 0x9D237A4: open (open64.c:41) ==608386== by 0x16236F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==608386== by 0x1621A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==608386== by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==608386== by 0xE553023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==608386== by 0xE553FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==608386== by 0x13FA746A: ??? ==608386== by 0xEBA8F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==608386== by 0xEB84B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==608386== by 0xEB35CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==608386== by 0xEA60EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==608386== by 0x13F95F03: ??? ==608386== by 0xEA954CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==608386== by 0x9957418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==608386== by 0x98F0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==608386== by 0x85E7D38: PetscInitialize (pinit.c:924) ==608386== by 0x8452153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==608386== by 0x84521A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==608386== by 0x1363CF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==608386== by 0x130B8B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==608386== by 0x133882: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==608386== by 0x133722: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==608386== by 0x133DB9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==608386== by 0x12BB65: main (TestCvodeCells.cpp:19) ==608386== ==608386== Open file descriptor 19: /dev/nvidiactl ==608386== at 0x9D237A4: open (open64.c:41) ==608386== by 0x163CB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==608386== by 0x163D08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==608386== by 0x1621A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==608386== by 0x161648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==608386== by 0xE553023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==608386== by 0xE553FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==608386== by 0x13FA746A: ??? ==608386== by 0xEBA8F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==608386== by 0xEB84B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==608386== by 0xEB35CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==608386== by 0xEA60EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==608386== by 0x13F95F03: ??? ==608386== by 0xEA954CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==608386== by 0x9957418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==608386== by 0x98F0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==608386== by 0x85E7D38: PetscInitialize (pinit.c:924) ==608386== by 0x8452153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==608386== by 0x84521A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==608386== by 0x1363CF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==608386== by 0x130B8B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==608386== by 0x133882: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==608386== by 0x133722: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==608386== by 0x133DB9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==608386== by 0x12BB65: main (TestCvodeCells.cpp:19) ==608386== ==608386== Open file descriptor 12: ==608386== at 0x9D2426D: pipe (pipe.c:29) ==608386== by 0x13F9507D: ??? ==608386== by 0xEA954CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==608386== by 0x9957418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==608386== by 0x98F0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==608386== by 0x85E7D38: PetscInitialize (pinit.c:924) ==608386== by 0x8452153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==608386== by 0x84521A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==608386== by 0x1363CF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==608386== by 0x130B8B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==608386== by 0x133882: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==608386== by 0x133722: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==608386== by 0x133DB9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==608386== by 0x12BB65: main (TestCvodeCells.cpp:19) ==608386== ==608386== Open file descriptor 8: /dev/shm/open_mpi.0000 ==608386== at 0x9D28C0C: __open_nocancel (open64_nocancel.c:39) ==608386== by 0x9CACBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==608386== by 0x8486822: ??? ==608386== by 0x848696F: ??? ==608386== by 0xEB3C6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==608386== by 0xEB3C938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==608386== by 0xEAF2922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==608386== by 0xEA952DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==608386== by 0x9957418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==608386== by 0x98F0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==608386== by 0x85E7D38: PetscInitialize (pinit.c:924) ==608386== by 0x8452153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==608386== by 0x84521A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==608386== by 0x1363CF: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==608386== by 0x130B8B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==608386== by 0x133882: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==608386== by 0x133722: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==608386== by 0x133DB9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==608386== by 0x12BB65: main (TestCvodeCells.cpp:19) ==608386== ==608386== Open file descriptor 116: ==608386== ==608386== ==608386== Open file descriptor 113: ==608386== ==608386== ==608386== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCvodeCells_valgrind.txt ==608386== ==608386== ==608386== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==608386== ==608386== ==608386== ==608386== HEAP SUMMARY: ==608386== in use at exit: 1,877,575 bytes in 11,738 blocks ==608386== total heap usage: 239,478 allocs, 227,740 frees, 1,558,576,476 bytes allocated ==608386== ==608386== LEAK SUMMARY: ==608386== definitely lost: 0 bytes in 0 blocks ==608386== indirectly lost: 0 bytes in 0 blocks ==608386== possibly lost: 0 bytes in 0 blocks ==608386== still reachable: 1,831 bytes in 6 blocks ==608386== suppressed: 1,875,744 bytes in 11,732 blocks ==608386== Reachable blocks (those to which a pointer was found) are not shown. ==608386== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==608386== ==608386== For lists of detected and suppressed errors, rerun with: -s ==608386== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 49 from 49)