==607342== Memcheck, a memory error detector ==607342== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==607342== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==607342== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningNodeBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==607342== Parent PID: 591878 ==607342== ==607342== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==607342== This could cause spurious value errors to appear. ==607342== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==607342== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==607342== This could cause spurious value errors to appear. ==607342== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==607342== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==607342== This could cause spurious value errors to appear. ==607342== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==607342== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==607342== This could cause spurious value errors to appear. ==607342== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==607342== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==607342== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==607342== Warning: set address range perms: large range [0x1bf1f000, 0x3bf1e000) (noaccess) ==607342== ==607342== FILE DESCRIPTORS: 14 open (3 std) at exit. ==607342== Open file descriptor 23: /dev/nvidia0 ==607342== at 0xEC597A4: open (open64.c:41) ==607342== by 0x1AFCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607342== by 0x1AFCD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607342== by 0x1B066B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607342== by 0x1AF54026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607342== by 0x1AF5D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607342== by 0x1AFD5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607342== by 0x1B05FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607342== by 0x1AE1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607342== by 0x1AD648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607342== by 0x13AEB023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==607342== by 0x13AEBFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==607342== by 0x18A3246A: ??? ==607342== by 0x1413EF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==607342== by 0x1411AB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==607342== by 0x140CBCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==607342== by 0x13FF8EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==607342== by 0x18A20F03: ??? ==607342== by 0x1402D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==607342== by 0x108FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==607342== by 0x10893D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==607342== by 0xF58AD38: PetscInitialize (pinit.c:924) ==607342== by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==607342== by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==607342== by 0x12C638: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==607342== by 0x127BAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==607342== by 0x12A25C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==607342== by 0x12A0FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==607342== by 0x12A793: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==607342== by 0x125FD5: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) ==607342== ==607342== Open file descriptor 22: /dev/nvidia0 ==607342== at 0xEC597A4: open (open64.c:41) ==607342== by 0x1AFCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607342== by 0x1AFCD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607342== by 0x1AF5407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607342== by 0x1AF5D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607342== by 0x1AFD5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607342== by 0x1B05FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607342== by 0x1AE1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607342== by 0x1AD648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607342== by 0x13AEB023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==607342== by 0x13AEBFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==607342== by 0x18A3246A: ??? ==607342== by 0x1413EF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==607342== by 0x1411AB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==607342== by 0x140CBCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==607342== by 0x13FF8EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==607342== by 0x18A20F03: ??? ==607342== by 0x1402D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==607342== by 0x108FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==607342== by 0x10893D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==607342== by 0xF58AD38: PetscInitialize (pinit.c:924) ==607342== by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==607342== by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==607342== by 0x12C638: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==607342== by 0x127BAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==607342== by 0x12A25C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==607342== by 0x12A0FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==607342== by 0x12A793: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==607342== by 0x125FD5: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) ==607342== ==607342== Open file descriptor 21: /dev/nvidia0 ==607342== at 0xEC597A4: open (open64.c:41) ==607342== by 0x1AFCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607342== by 0x1AFCC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607342== by 0x1AF5DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607342== by 0x1AFD54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607342== by 0x1B05FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607342== by 0x1AE1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607342== by 0x1AD648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607342== by 0x13AEB023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==607342== by 0x13AEBFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==607342== by 0x18A3246A: ??? ==607342== by 0x1413EF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==607342== by 0x1411AB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==607342== by 0x140CBCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==607342== by 0x13FF8EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==607342== by 0x18A20F03: ??? ==607342== by 0x1402D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==607342== by 0x108FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==607342== by 0x10893D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==607342== by 0xF58AD38: PetscInitialize (pinit.c:924) ==607342== by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==607342== by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==607342== by 0x12C638: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==607342== by 0x127BAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==607342== by 0x12A25C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==607342== by 0x12A0FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==607342== by 0x12A793: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==607342== by 0x125FD5: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) ==607342== ==607342== Open file descriptor 20: /dev/nvidia-uvm ==607342== at 0xEC597A4: open (open64.c:41) ==607342== by 0x1AE36F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607342== by 0x1AE1A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607342== by 0x1AD648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607342== by 0x13AEB023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==607342== by 0x13AEBFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==607342== by 0x18A3246A: ??? ==607342== by 0x1413EF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==607342== by 0x1411AB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==607342== by 0x140CBCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==607342== by 0x13FF8EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==607342== by 0x18A20F03: ??? ==607342== by 0x1402D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==607342== by 0x108FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==607342== by 0x10893D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==607342== by 0xF58AD38: PetscInitialize (pinit.c:924) ==607342== by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==607342== by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==607342== by 0x12C638: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==607342== by 0x127BAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==607342== by 0x12A25C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==607342== by 0x12A0FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==607342== by 0x12A793: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==607342== by 0x125FD5: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) ==607342== ==607342== Open file descriptor 19: /dev/nvidiactl ==607342== at 0xEC597A4: open (open64.c:41) ==607342== by 0x1AFCB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607342== by 0x1AFD08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607342== by 0x1AE1A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607342== by 0x1AD648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607342== by 0x13AEB023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==607342== by 0x13AEBFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==607342== by 0x18A3246A: ??? ==607342== by 0x1413EF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==607342== by 0x1411AB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==607342== by 0x140CBCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==607342== by 0x13FF8EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==607342== by 0x18A20F03: ??? ==607342== by 0x1402D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==607342== by 0x108FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==607342== by 0x10893D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==607342== by 0xF58AD38: PetscInitialize (pinit.c:924) ==607342== by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==607342== by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==607342== by 0x12C638: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==607342== by 0x127BAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==607342== by 0x12A25C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==607342== by 0x12A0FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==607342== by 0x12A793: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==607342== by 0x125FD5: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) ==607342== ==607342== Open file descriptor 12: ==607342== at 0xEC5A26D: pipe (pipe.c:29) ==607342== by 0x18A2007D: ??? ==607342== by 0x1402D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==607342== by 0x108FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==607342== by 0x10893D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==607342== by 0xF58AD38: PetscInitialize (pinit.c:924) ==607342== by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==607342== by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==607342== by 0x12C638: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==607342== by 0x127BAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==607342== by 0x12A25C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==607342== by 0x12A0FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==607342== by 0x12A793: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==607342== by 0x125FD5: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) ==607342== ==607342== Open file descriptor 8: /dev/shm/open_mpi.0000 ==607342== at 0xEC5EC0C: __open_nocancel (open64_nocancel.c:39) ==607342== by 0xEBE2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==607342== by 0xE4A3822: ??? ==607342== by 0xE4A396F: ??? ==607342== by 0x140D26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==607342== by 0x140D2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==607342== by 0x14088922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==607342== by 0x1402D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==607342== by 0x108FA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==607342== by 0x10893D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==607342== by 0xF58AD38: PetscInitialize (pinit.c:924) ==607342== by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==607342== by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==607342== by 0x12C638: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==607342== by 0x127BAD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==607342== by 0x12A25C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==607342== by 0x12A0FC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==607342== by 0x12A793: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==607342== by 0x125FD5: main (TestRunningNodeBasedSimulationsTutorial.cpp:19) ==607342== ==607342== Open file descriptor 116: ==607342== ==607342== ==607342== Open file descriptor 113: ==607342== ==607342== ==607342== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningNodeBasedSimulationsTutorial_valgrind.txt ==607342== ==607342== ==607342== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==607342== ==607342== ==607342== ==607342== HEAP SUMMARY: ==607342== in use at exit: 1,875,936 bytes in 11,739 blocks ==607342== total heap usage: 680,346 allocs, 668,607 frees, 1,920,051,724 bytes allocated ==607342== ==607342== LEAK SUMMARY: ==607342== definitely lost: 0 bytes in 0 blocks ==607342== indirectly lost: 0 bytes in 0 blocks ==607342== possibly lost: 0 bytes in 0 blocks ==607342== still reachable: 56 bytes in 3 blocks ==607342== suppressed: 1,875,880 bytes in 11,736 blocks ==607342== Reachable blocks (those to which a pointer was found) are not shown. ==607342== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==607342== ==607342== For lists of detected and suppressed errors, rerun with: -s ==607342== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 53 from 53)