==607387== Memcheck, a memory error detector
==607387== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==607387== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info
==607387== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningVertexBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info
==607387== Parent PID: 591878
==607387== 
==607387== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints.
==607387==    This could cause spurious value errors to appear.
==607387==    See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper.
==607387== Warning: noted but unhandled ioctl 0x27 with no size/direction hints.
==607387==    This could cause spurious value errors to appear.
==607387==    See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper.
==607387== Warning: noted but unhandled ioctl 0x25 with no size/direction hints.
==607387==    This could cause spurious value errors to appear.
==607387==    See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper.
==607387== Warning: noted but unhandled ioctl 0x17 with no size/direction hints.
==607387==    This could cause spurious value errors to appear.
==607387==    See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper.
==607387== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess)
==607387== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess)
==607387== Warning: set address range perms: large range [0x1bf1f000, 0x3bf1e000) (noaccess)
==607387== 
==607387== FILE DESCRIPTORS: 14 open (3 std) at exit.
==607387== Open file descriptor 23: /dev/nvidia0
==607387==    at 0x101107A4: open (open64.c:41)
==607387==    by 0x1AFCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==607387==    by 0x1AFCD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==607387==    by 0x1B066B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==607387==    by 0x1AF54026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==607387==    by 0x1AF5D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==607387==    by 0x1AFD5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==607387==    by 0x1B05FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==607387==    by 0x1AE1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==607387==    by 0x1AD648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==607387==    by 0x13A4B023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==607387==    by 0x13A4BFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==607387==    by 0x18A3246A: ???
==607387==    by 0x140A0F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==607387==    by 0x1407CB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==607387==    by 0x1402BCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==607387==    by 0x13F58EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==607387==    by 0x18A20F03: ???
==607387==    by 0x13F8D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==607387==    by 0xF932418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==607387==    by 0xF8CBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==607387==    by 0xE597D38: PetscInitialize (pinit.c:924)
==607387==    by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==607387==    by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==607387==    by 0x1298A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==607387==    by 0x124A2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==607387==    by 0x1270AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==607387==    by 0x126F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==607387==    by 0x1275E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==607387==    by 0x122E55: main (TestRunningVertexBasedSimulationsTutorial.cpp:19)
==607387== 
==607387== Open file descriptor 22: /dev/nvidia0
==607387==    at 0x101107A4: open (open64.c:41)
==607387==    by 0x1AFCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==607387==    by 0x1AFCD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==607387==    by 0x1AF5407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==607387==    by 0x1AF5D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==607387==    by 0x1AFD5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==607387==    by 0x1B05FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==607387==    by 0x1AE1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==607387==    by 0x1AD648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==607387==    by 0x13A4B023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==607387==    by 0x13A4BFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==607387==    by 0x18A3246A: ???
==607387==    by 0x140A0F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==607387==    by 0x1407CB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==607387==    by 0x1402BCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==607387==    by 0x13F58EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==607387==    by 0x18A20F03: ???
==607387==    by 0x13F8D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==607387==    by 0xF932418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==607387==    by 0xF8CBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==607387==    by 0xE597D38: PetscInitialize (pinit.c:924)
==607387==    by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==607387==    by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==607387==    by 0x1298A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==607387==    by 0x124A2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==607387==    by 0x1270AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==607387==    by 0x126F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==607387==    by 0x1275E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==607387==    by 0x122E55: main (TestRunningVertexBasedSimulationsTutorial.cpp:19)
==607387== 
==607387== Open file descriptor 21: /dev/nvidia0
==607387==    at 0x101107A4: open (open64.c:41)
==607387==    by 0x1AFCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==607387==    by 0x1AFCC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==607387==    by 0x1AF5DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==607387==    by 0x1AFD54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==607387==    by 0x1B05FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==607387==    by 0x1AE1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==607387==    by 0x1AD648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==607387==    by 0x13A4B023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==607387==    by 0x13A4BFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==607387==    by 0x18A3246A: ???
==607387==    by 0x140A0F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==607387==    by 0x1407CB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==607387==    by 0x1402BCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==607387==    by 0x13F58EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==607387==    by 0x18A20F03: ???
==607387==    by 0x13F8D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==607387==    by 0xF932418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==607387==    by 0xF8CBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==607387==    by 0xE597D38: PetscInitialize (pinit.c:924)
==607387==    by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==607387==    by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==607387==    by 0x1298A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==607387==    by 0x124A2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==607387==    by 0x1270AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==607387==    by 0x126F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==607387==    by 0x1275E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==607387==    by 0x122E55: main (TestRunningVertexBasedSimulationsTutorial.cpp:19)
==607387== 
==607387== Open file descriptor 20: /dev/nvidia-uvm
==607387==    at 0x101107A4: open (open64.c:41)
==607387==    by 0x1AE36F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==607387==    by 0x1AE1A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==607387==    by 0x1AD648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==607387==    by 0x13A4B023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==607387==    by 0x13A4BFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==607387==    by 0x18A3246A: ???
==607387==    by 0x140A0F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==607387==    by 0x1407CB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==607387==    by 0x1402BCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==607387==    by 0x13F58EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==607387==    by 0x18A20F03: ???
==607387==    by 0x13F8D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==607387==    by 0xF932418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==607387==    by 0xF8CBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==607387==    by 0xE597D38: PetscInitialize (pinit.c:924)
==607387==    by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==607387==    by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==607387==    by 0x1298A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==607387==    by 0x124A2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==607387==    by 0x1270AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==607387==    by 0x126F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==607387==    by 0x1275E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==607387==    by 0x122E55: main (TestRunningVertexBasedSimulationsTutorial.cpp:19)
==607387== 
==607387== Open file descriptor 19: /dev/nvidiactl
==607387==    at 0x101107A4: open (open64.c:41)
==607387==    by 0x1AFCB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==607387==    by 0x1AFD08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==607387==    by 0x1AE1A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==607387==    by 0x1AD648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==607387==    by 0x13A4B023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==607387==    by 0x13A4BFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==607387==    by 0x18A3246A: ???
==607387==    by 0x140A0F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==607387==    by 0x1407CB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==607387==    by 0x1402BCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==607387==    by 0x13F58EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==607387==    by 0x18A20F03: ???
==607387==    by 0x13F8D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==607387==    by 0xF932418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==607387==    by 0xF8CBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==607387==    by 0xE597D38: PetscInitialize (pinit.c:924)
==607387==    by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==607387==    by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==607387==    by 0x1298A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==607387==    by 0x124A2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==607387==    by 0x1270AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==607387==    by 0x126F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==607387==    by 0x1275E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==607387==    by 0x122E55: main (TestRunningVertexBasedSimulationsTutorial.cpp:19)
==607387== 
==607387== Open file descriptor 12:
==607387==    at 0x1011126D: pipe (pipe.c:29)
==607387==    by 0x18A2007D: ???
==607387==    by 0x13F8D4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==607387==    by 0xF932418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==607387==    by 0xF8CBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==607387==    by 0xE597D38: PetscInitialize (pinit.c:924)
==607387==    by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==607387==    by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==607387==    by 0x1298A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==607387==    by 0x124A2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==607387==    by 0x1270AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==607387==    by 0x126F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==607387==    by 0x1275E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==607387==    by 0x122E55: main (TestRunningVertexBasedSimulationsTutorial.cpp:19)
==607387== 
==607387== Open file descriptor 8: /dev/shm/open_mpi.0000
==607387==    at 0x10115C0C: __open_nocancel (open64_nocancel.c:39)
==607387==    by 0x10099BCF: shm_open@@GLIBC_2.34 (shm_open.c:40)
==607387==    by 0xF821822: ???
==607387==    by 0xF82196F: ???
==607387==    by 0x140326DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==607387==    by 0x14032938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==607387==    by 0x13FE8922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==607387==    by 0x13F8D2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==607387==    by 0xF932418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==607387==    by 0xF8CBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==607387==    by 0xE597D38: PetscInitialize (pinit.c:924)
==607387==    by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==607387==    by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==607387==    by 0x1298A9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==607387==    by 0x124A2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==607387==    by 0x1270AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==607387==    by 0x126F4A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==607387==    by 0x1275E1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==607387==    by 0x122E55: main (TestRunningVertexBasedSimulationsTutorial.cpp:19)
==607387== 
==607387== Open file descriptor 116:
==607387==    <inherited from parent>
==607387== 
==607387== Open file descriptor 113:
==607387==    <inherited from parent>
==607387== 
==607387== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningVertexBasedSimulationsTutorial_valgrind.txt
==607387==    <inherited from parent>
==607387== 
==607387== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp
==607387==    <inherited from parent>
==607387== 
==607387== 
==607387== HEAP SUMMARY:
==607387==     in use at exit: 1,875,880 bytes in 11,735 blocks
==607387==   total heap usage: 1,407,360 allocs, 1,395,625 frees, 1,593,122,512 bytes allocated
==607387== 
==607387== LEAK SUMMARY:
==607387==    definitely lost: 0 bytes in 0 blocks
==607387==    indirectly lost: 0 bytes in 0 blocks
==607387==      possibly lost: 0 bytes in 0 blocks
==607387==    still reachable: 56 bytes in 3 blocks
==607387==         suppressed: 1,875,824 bytes in 11,732 blocks
==607387== Reachable blocks (those to which a pointer was found) are not shown.
==607387== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==607387== 
==607387== For lists of detected and suppressed errors, rerun with: -s
==607387== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 49 from 49)