==607508== Memcheck, a memory error detector ==607508== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==607508== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==607508== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVertexCryptBoundaryForce -malloc_debug -malloc_dump -memory_info ==607508== Parent PID: 591878 ==607508== ==607508== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==607508== This could cause spurious value errors to appear. ==607508== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==607508== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==607508== This could cause spurious value errors to appear. ==607508== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==607508== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==607508== This could cause spurious value errors to appear. ==607508== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==607508== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==607508== This could cause spurious value errors to appear. ==607508== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==607508== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==607508== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==607508== Warning: set address range perms: large range [0x1db1f000, 0x3db1e000) (noaccess) ==607508== ==607508== FILE DESCRIPTORS: 14 open (3 std) at exit. ==607508== Open file descriptor 23: /dev/nvidia0 ==607508== at 0x104327A4: open (open64.c:41) ==607508== by 0x1CBCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607508== by 0x1CBCD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607508== by 0x1CC66B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607508== by 0x1CB54026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607508== by 0x1CB5D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607508== by 0x1CBD5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607508== by 0x1CC5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607508== by 0x1CA1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607508== by 0x1C9648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607508== by 0x153B0023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==607508== by 0x153B0FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==607508== by 0x1A6F446A: ??? ==607508== by 0x15A01F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==607508== by 0x159DDB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==607508== by 0x1598ECB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==607508== by 0x158BBEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==607508== by 0x1A6E2F03: ??? ==607508== by 0x158F04CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==607508== by 0x121BA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==607508== by 0x12153D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==607508== by 0x10E4AD38: PetscInitialize (pinit.c:924) ==607508== by 0xFD2F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==607508== by 0xFD2F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==607508== by 0x126BFE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==607508== by 0x11FE4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==607508== by 0x1228FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==607508== by 0x12279C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==607508== by 0x122E33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==607508== by 0x11E275: main (TestVertexCryptBoundaryForce.cpp:19) ==607508== ==607508== Open file descriptor 22: /dev/nvidia0 ==607508== at 0x104327A4: open (open64.c:41) ==607508== by 0x1CBCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607508== by 0x1CBCD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607508== by 0x1CB5407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607508== by 0x1CB5D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607508== by 0x1CBD5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607508== by 0x1CC5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607508== by 0x1CA1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607508== by 0x1C9648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607508== by 0x153B0023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==607508== by 0x153B0FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==607508== by 0x1A6F446A: ??? ==607508== by 0x15A01F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==607508== by 0x159DDB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==607508== by 0x1598ECB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==607508== by 0x158BBEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==607508== by 0x1A6E2F03: ??? ==607508== by 0x158F04CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==607508== by 0x121BA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==607508== by 0x12153D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==607508== by 0x10E4AD38: PetscInitialize (pinit.c:924) ==607508== by 0xFD2F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==607508== by 0xFD2F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==607508== by 0x126BFE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==607508== by 0x11FE4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==607508== by 0x1228FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==607508== by 0x12279C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==607508== by 0x122E33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==607508== by 0x11E275: main (TestVertexCryptBoundaryForce.cpp:19) ==607508== ==607508== Open file descriptor 21: /dev/nvidia0 ==607508== at 0x104327A4: open (open64.c:41) ==607508== by 0x1CBCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607508== by 0x1CBCC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607508== by 0x1CB5DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607508== by 0x1CBD54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607508== by 0x1CC5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607508== by 0x1CA1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607508== by 0x1C9648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607508== by 0x153B0023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==607508== by 0x153B0FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==607508== by 0x1A6F446A: ??? ==607508== by 0x15A01F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==607508== by 0x159DDB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==607508== by 0x1598ECB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==607508== by 0x158BBEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==607508== by 0x1A6E2F03: ??? ==607508== by 0x158F04CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==607508== by 0x121BA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==607508== by 0x12153D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==607508== by 0x10E4AD38: PetscInitialize (pinit.c:924) ==607508== by 0xFD2F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==607508== by 0xFD2F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==607508== by 0x126BFE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==607508== by 0x11FE4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==607508== by 0x1228FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==607508== by 0x12279C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==607508== by 0x122E33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==607508== by 0x11E275: main (TestVertexCryptBoundaryForce.cpp:19) ==607508== ==607508== Open file descriptor 20: /dev/nvidia-uvm ==607508== at 0x104327A4: open (open64.c:41) ==607508== by 0x1CA36F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607508== by 0x1CA1A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607508== by 0x1C9648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607508== by 0x153B0023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==607508== by 0x153B0FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==607508== by 0x1A6F446A: ??? ==607508== by 0x15A01F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==607508== by 0x159DDB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==607508== by 0x1598ECB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==607508== by 0x158BBEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==607508== by 0x1A6E2F03: ??? ==607508== by 0x158F04CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==607508== by 0x121BA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==607508== by 0x12153D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==607508== by 0x10E4AD38: PetscInitialize (pinit.c:924) ==607508== by 0xFD2F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==607508== by 0xFD2F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==607508== by 0x126BFE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==607508== by 0x11FE4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==607508== by 0x1228FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==607508== by 0x12279C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==607508== by 0x122E33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==607508== by 0x11E275: main (TestVertexCryptBoundaryForce.cpp:19) ==607508== ==607508== Open file descriptor 19: /dev/nvidiactl ==607508== at 0x104327A4: open (open64.c:41) ==607508== by 0x1CBCB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607508== by 0x1CBD08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607508== by 0x1CA1A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607508== by 0x1C9648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==607508== by 0x153B0023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==607508== by 0x153B0FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==607508== by 0x1A6F446A: ??? ==607508== by 0x15A01F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==607508== by 0x159DDB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==607508== by 0x1598ECB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==607508== by 0x158BBEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==607508== by 0x1A6E2F03: ??? ==607508== by 0x158F04CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==607508== by 0x121BA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==607508== by 0x12153D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==607508== by 0x10E4AD38: PetscInitialize (pinit.c:924) ==607508== by 0xFD2F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==607508== by 0xFD2F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==607508== by 0x126BFE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==607508== by 0x11FE4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==607508== by 0x1228FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==607508== by 0x12279C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==607508== by 0x122E33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==607508== by 0x11E275: main (TestVertexCryptBoundaryForce.cpp:19) ==607508== ==607508== Open file descriptor 12: ==607508== at 0x1043326D: pipe (pipe.c:29) ==607508== by 0x1A6E207D: ??? ==607508== by 0x158F04CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==607508== by 0x121BA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==607508== by 0x12153D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==607508== by 0x10E4AD38: PetscInitialize (pinit.c:924) ==607508== by 0xFD2F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==607508== by 0xFD2F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==607508== by 0x126BFE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==607508== by 0x11FE4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==607508== by 0x1228FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==607508== by 0x12279C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==607508== by 0x122E33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==607508== by 0x11E275: main (TestVertexCryptBoundaryForce.cpp:19) ==607508== ==607508== Open file descriptor 8: /dev/shm/open_mpi.0000 ==607508== at 0x10437C0C: __open_nocancel (open64_nocancel.c:39) ==607508== by 0x103BBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==607508== by 0xFD63822: ??? ==607508== by 0xFD6396F: ??? ==607508== by 0x159956DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==607508== by 0x15995938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==607508== by 0x1594B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==607508== by 0x158F02DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==607508== by 0x121BA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==607508== by 0x12153D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==607508== by 0x10E4AD38: PetscInitialize (pinit.c:924) ==607508== by 0xFD2F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==607508== by 0xFD2F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==607508== by 0x126BFE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==607508== by 0x11FE4D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==607508== by 0x1228FC: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==607508== by 0x12279C: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==607508== by 0x122E33: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==607508== by 0x11E275: main (TestVertexCryptBoundaryForce.cpp:19) ==607508== ==607508== Open file descriptor 116: ==607508== ==607508== ==607508== Open file descriptor 113: ==607508== ==607508== ==607508== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexCryptBoundaryForce_valgrind.txt ==607508== ==607508== ==607508== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==607508== ==607508== ==607508== ==607508== HEAP SUMMARY: ==607508== in use at exit: 1,875,920 bytes in 11,739 blocks ==607508== total heap usage: 64,498 allocs, 52,759 frees, 1,533,762,023 bytes allocated ==607508== ==607508== LEAK SUMMARY: ==607508== definitely lost: 0 bytes in 0 blocks ==607508== indirectly lost: 0 bytes in 0 blocks ==607508== possibly lost: 0 bytes in 0 blocks ==607508== still reachable: 56 bytes in 3 blocks ==607508== suppressed: 1,875,864 bytes in 11,736 blocks ==607508== Reachable blocks (those to which a pointer was found) are not shown. ==607508== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==607508== ==607508== For lists of detected and suppressed errors, rerun with: -s ==607508== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 53 from 53)