==268516== Memcheck, a memory error detector ==268516== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==268516== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==268516== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestAlarcon2004OxygenBasedCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==268516== Parent PID: 266982 ==268516== ==268516== ==268516== FILE DESCRIPTORS: 9 open (3 std) at exit. ==268516== Open file descriptor 12: ==268516== at 0xEF9322D: pipe (pipe.c:29) ==268516== by 0x1976B07D: ??? ==268516== by 0x139004CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==268516== by 0xEBE0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==268516== by 0xEB79D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==268516== by 0xD870D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==268516== by 0xD6E22DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==268516== by 0xD6E232D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==268516== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==268516== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==268516== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==268516== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==268516== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==268516== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==268516== ==268516== Open file descriptor 8: /dev/shm/open_mpi.0000 ==268516== at 0xEF97BCC: __open_nocancel (open64_nocancel.c:39) ==268516== by 0xEF1BC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==268516== by 0xD717822: ??? ==268516== by 0xD71796F: ??? ==268516== by 0x139A56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==268516== by 0x139A5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==268516== by 0x1395B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==268516== by 0x139002DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==268516== by 0xEBE0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==268516== by 0xEB79D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==268516== by 0xD870D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==268516== by 0xD6E22DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==268516== by 0xD6E232D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==268516== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==268516== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==268516== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==268516== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==268516== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==268516== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==268516== ==268516== Open file descriptor 116: ==268516== ==268516== ==268516== Open file descriptor 113: ==268516== ==268516== ==268516== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt ==268516== ==268516== ==268516== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==268516== ==268516== ==268516== ==268516== HEAP SUMMARY: ==268516== in use at exit: 857,987 bytes in 12,112 blocks ==268516== total heap usage: 174,756 allocs, 162,644 frees, 1,554,108,615 bytes allocated ==268516== ==268516== LEAK SUMMARY: ==268516== definitely lost: 0 bytes in 0 blocks ==268516== indirectly lost: 0 bytes in 0 blocks ==268516== possibly lost: 0 bytes in 0 blocks ==268516== still reachable: 24 bytes in 2 blocks ==268516== suppressed: 857,963 bytes in 12,110 blocks ==268516== Reachable blocks (those to which a pointer was found) are not shown. ==268516== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==268516== ==268516== For lists of detected and suppressed errors, rerun with: -s ==268516== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 23 from 23)