==309389== Memcheck, a memory error detector ==309389== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==309389== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==309389== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningVertexBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info ==309389== Parent PID: 300230 ==309389== ==309389== ==309389== FILE DESCRIPTORS: 9 open (3 std) at exit. ==309389== Open file descriptor 12: ==309389== at 0x10A4722D: pipe (pipe.c:29) ==309389== by 0x1976907D: ??? ==309389== by 0x14CC04CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==309389== by 0x105AD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==309389== by 0x10546D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==309389== by 0xF21AD38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==309389== by 0xF0F12DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==309389== by 0xF0F132D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==309389== by 0x129805: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==309389== by 0x1249ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==309389== by 0x127006: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==309389== by 0x126EA6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==309389== by 0x12753D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==309389== by 0x122E15: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) ==309389== ==309389== Open file descriptor 8: /dev/shm/open_mpi.0000 ==309389== at 0x10A4BBCC: __open_nocancel (open64_nocancel.c:39) ==309389== by 0x109CFC4F: shm_open@@GLIBC_2.34 (shm_open.c:40) ==309389== by 0x104A4822: ??? ==309389== by 0x104A496F: ??? ==309389== by 0x14D656DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==309389== by 0x14D65938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==309389== by 0x14D1B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==309389== by 0x14CC02DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==309389== by 0x105AD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==309389== by 0x10546D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==309389== by 0xF21AD38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==309389== by 0xF0F12DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==309389== by 0xF0F132D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==309389== by 0x129805: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==309389== by 0x1249ED: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==309389== by 0x127006: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==309389== by 0x126EA6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==309389== by 0x12753D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==309389== by 0x122E15: main (TestRunningVertexBasedSimulationsTutorial.cpp:19) ==309389== ==309389== Open file descriptor 116: ==309389== ==309389== ==309389== Open file descriptor 113: ==309389== ==309389== ==309389== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRunningVertexBasedSimulationsTutorial_valgrind.txt ==309389== ==309389== ==309389== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==309389== ==309389== ==309389== ==309389== HEAP SUMMARY: ==309389== in use at exit: 857,959 bytes in 12,109 blocks ==309389== total heap usage: 1,396,811 allocs, 1,384,702 frees, 1,602,390,848 bytes allocated ==309389== ==309389== LEAK SUMMARY: ==309389== definitely lost: 0 bytes in 0 blocks ==309389== indirectly lost: 0 bytes in 0 blocks ==309389== possibly lost: 0 bytes in 0 blocks ==309389== still reachable: 56 bytes in 3 blocks ==309389== suppressed: 857,903 bytes in 12,106 blocks ==309389== Reachable blocks (those to which a pointer was found) are not shown. ==309389== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==309389== ==309389== For lists of detected and suppressed errors, rerun with: -s ==309389== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 19)