==707569== Memcheck, a memory error detector ==707569== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==707569== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==707569== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/lung/test/TestAirwayGenerator -malloc_debug -malloc_dump -memory_info ==707569== Parent PID: 691175 ==707569== ==707569== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==707569== This could cause spurious value errors to appear. ==707569== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==707569== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==707569== This could cause spurious value errors to appear. ==707569== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==707569== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==707569== This could cause spurious value errors to appear. ==707569== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==707569== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==707569== This could cause spurious value errors to appear. ==707569== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==707569== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==707569== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==707569== Warning: set address range perms: large range [0x13d1f000, 0x33d1e000) (noaccess) ==707569== ==707569== FILE DESCRIPTORS: 14 open (3 std) at exit. ==707569== Open file descriptor 23: /dev/nvidia0 ==707569== at 0x6BD87A4: open (open64.c:41) ==707569== by 0x12DCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707569== by 0x12DCD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707569== by 0x12E66B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707569== by 0x12D54026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707569== by 0x12D5D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707569== by 0x12DD5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707569== by 0x12E5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707569== by 0x12C1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707569== by 0x12B648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707569== by 0xB585023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==707569== by 0xB585FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==707569== by 0x107AE46A: ??? ==707569== by 0xBBD8F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==707569== by 0xBBB4B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==707569== by 0xBB65CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==707569== by 0xBA92EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==707569== by 0x1079CF03: ??? ==707569== by 0xBAC74CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==707569== by 0x5EDE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707569== by 0x5E77D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707569== by 0x4B43D38: PetscInitialize (pinit.c:924) ==707569== by 0x4A182DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==707569== by 0x4A1832D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==707569== by 0x11872F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==707569== by 0x11390D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==707569== by 0x1166E8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==707569== by 0x116588: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==707569== by 0x116C1F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==707569== by 0x111D35: main (TestAirwayGenerator.cpp:19) ==707569== ==707569== Open file descriptor 22: /dev/nvidia0 ==707569== at 0x6BD87A4: open (open64.c:41) ==707569== by 0x12DCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707569== by 0x12DCD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707569== by 0x12D5407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707569== by 0x12D5D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707569== by 0x12DD5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707569== by 0x12E5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707569== by 0x12C1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707569== by 0x12B648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707569== by 0xB585023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==707569== by 0xB585FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==707569== by 0x107AE46A: ??? ==707569== by 0xBBD8F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==707569== by 0xBBB4B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==707569== by 0xBB65CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==707569== by 0xBA92EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==707569== by 0x1079CF03: ??? ==707569== by 0xBAC74CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==707569== by 0x5EDE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707569== by 0x5E77D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707569== by 0x4B43D38: PetscInitialize (pinit.c:924) ==707569== by 0x4A182DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==707569== by 0x4A1832D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==707569== by 0x11872F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==707569== by 0x11390D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==707569== by 0x1166E8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==707569== by 0x116588: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==707569== by 0x116C1F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==707569== by 0x111D35: main (TestAirwayGenerator.cpp:19) ==707569== ==707569== Open file descriptor 21: /dev/nvidia0 ==707569== at 0x6BD87A4: open (open64.c:41) ==707569== by 0x12DCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707569== by 0x12DCC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707569== by 0x12D5DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707569== by 0x12DD54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707569== by 0x12E5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707569== by 0x12C1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707569== by 0x12B648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707569== by 0xB585023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==707569== by 0xB585FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==707569== by 0x107AE46A: ??? ==707569== by 0xBBD8F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==707569== by 0xBBB4B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==707569== by 0xBB65CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==707569== by 0xBA92EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==707569== by 0x1079CF03: ??? ==707569== by 0xBAC74CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==707569== by 0x5EDE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707569== by 0x5E77D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707569== by 0x4B43D38: PetscInitialize (pinit.c:924) ==707569== by 0x4A182DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==707569== by 0x4A1832D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==707569== by 0x11872F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==707569== by 0x11390D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==707569== by 0x1166E8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==707569== by 0x116588: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==707569== by 0x116C1F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==707569== by 0x111D35: main (TestAirwayGenerator.cpp:19) ==707569== ==707569== Open file descriptor 20: /dev/nvidia-uvm ==707569== at 0x6BD87A4: open (open64.c:41) ==707569== by 0x12C36F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707569== by 0x12C1A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707569== by 0x12B648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707569== by 0xB585023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==707569== by 0xB585FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==707569== by 0x107AE46A: ??? ==707569== by 0xBBD8F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==707569== by 0xBBB4B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==707569== by 0xBB65CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==707569== by 0xBA92EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==707569== by 0x1079CF03: ??? ==707569== by 0xBAC74CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==707569== by 0x5EDE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707569== by 0x5E77D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707569== by 0x4B43D38: PetscInitialize (pinit.c:924) ==707569== by 0x4A182DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==707569== by 0x4A1832D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==707569== by 0x11872F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==707569== by 0x11390D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==707569== by 0x1166E8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==707569== by 0x116588: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==707569== by 0x116C1F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==707569== by 0x111D35: main (TestAirwayGenerator.cpp:19) ==707569== ==707569== Open file descriptor 19: /dev/nvidiactl ==707569== at 0x6BD87A4: open (open64.c:41) ==707569== by 0x12DCB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707569== by 0x12DD08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707569== by 0x12C1A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707569== by 0x12B648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707569== by 0xB585023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==707569== by 0xB585FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==707569== by 0x107AE46A: ??? ==707569== by 0xBBD8F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==707569== by 0xBBB4B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==707569== by 0xBB65CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==707569== by 0xBA92EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==707569== by 0x1079CF03: ??? ==707569== by 0xBAC74CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==707569== by 0x5EDE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707569== by 0x5E77D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707569== by 0x4B43D38: PetscInitialize (pinit.c:924) ==707569== by 0x4A182DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==707569== by 0x4A1832D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==707569== by 0x11872F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==707569== by 0x11390D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==707569== by 0x1166E8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==707569== by 0x116588: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==707569== by 0x116C1F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==707569== by 0x111D35: main (TestAirwayGenerator.cpp:19) ==707569== ==707569== Open file descriptor 12: ==707569== at 0x6BD926D: pipe (pipe.c:29) ==707569== by 0x1079C07D: ??? ==707569== by 0xBAC74CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==707569== by 0x5EDE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707569== by 0x5E77D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707569== by 0x4B43D38: PetscInitialize (pinit.c:924) ==707569== by 0x4A182DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==707569== by 0x4A1832D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==707569== by 0x11872F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==707569== by 0x11390D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==707569== by 0x1166E8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==707569== by 0x116588: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==707569== by 0x116C1F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==707569== by 0x111D35: main (TestAirwayGenerator.cpp:19) ==707569== ==707569== Open file descriptor 8: /dev/shm/open_mpi.0000 ==707569== at 0x6BDDC0C: __open_nocancel (open64_nocancel.c:39) ==707569== by 0x6B61BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==707569== by 0x5DCD822: ??? ==707569== by 0x5DCD96F: ??? ==707569== by 0xBB6C6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==707569== by 0xBB6C938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==707569== by 0xBB22922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==707569== by 0xBAC72DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==707569== by 0x5EDE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707569== by 0x5E77D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707569== by 0x4B43D38: PetscInitialize (pinit.c:924) ==707569== by 0x4A182DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==707569== by 0x4A1832D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==707569== by 0x11872F: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==707569== by 0x11390D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==707569== by 0x1166E8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==707569== by 0x116588: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==707569== by 0x116C1F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==707569== by 0x111D35: main (TestAirwayGenerator.cpp:19) ==707569== ==707569== Open file descriptor 116: ==707569== ==707569== ==707569== Open file descriptor 113: ==707569== ==707569== ==707569== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAirwayGenerator_valgrind.txt ==707569== ==707569== ==707569== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==707569== ==707569== ==707569== ==707569== HEAP SUMMARY: ==707569== in use at exit: 1,875,798 bytes in 11,738 blocks ==707569== total heap usage: 635,768 allocs, 624,030 frees, 1,981,685,802 bytes allocated ==707569== ==707569== LEAK SUMMARY: ==707569== definitely lost: 0 bytes in 0 blocks ==707569== indirectly lost: 0 bytes in 0 blocks ==707569== possibly lost: 0 bytes in 0 blocks ==707569== still reachable: 24 bytes in 2 blocks ==707569== suppressed: 1,875,774 bytes in 11,736 blocks ==707569== Reachable blocks (those to which a pointer was found) are not shown. ==707569== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==707569== ==707569== For lists of detected and suppressed errors, rerun with: -s ==707569== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 53 from 53)