==692839== Memcheck, a memory error detector ==692839== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==692839== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==692839== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCaUpdateRules -malloc_debug -malloc_dump -memory_info ==692839== Parent PID: 691175 ==692839== ==692839== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==692839== This could cause spurious value errors to appear. ==692839== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==692839== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==692839== This could cause spurious value errors to appear. ==692839== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==692839== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==692839== This could cause spurious value errors to appear. ==692839== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==692839== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==692839== This could cause spurious value errors to appear. ==692839== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==692839== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==692839== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==692839== Warning: set address range perms: large range [0x1cb1f000, 0x3cb1e000) (noaccess) ==692839== ==692839== FILE DESCRIPTORS: 14 open (3 std) at exit. ==692839== Open file descriptor 23: /dev/nvidia0 ==692839== at 0xDBE87A4: open (open64.c:41) ==692839== by 0x1BBCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692839== by 0x1BBCD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692839== by 0x1BC66B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692839== by 0x1BB54026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692839== by 0x1BB5D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692839== by 0x1BBD5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692839== by 0x1BC5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692839== by 0x1BA1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692839== by 0x1B9648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692839== by 0x1477E023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692839== by 0x1477EFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692839== by 0x196B846A: ??? ==692839== by 0x14DCFF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692839== by 0x14DABB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692839== by 0x14D5CCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==692839== by 0x14C89EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692839== by 0x196A6F03: ??? ==692839== by 0x14CBE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692839== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692839== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692839== by 0x10129D38: PetscInitialize (pinit.c:924) ==692839== by 0xD4A02DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==692839== by 0xD4A032D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==692839== by 0x132B46: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==692839== by 0x12BE43: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==692839== by 0x12E998: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==692839== by 0x12E893: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==692839== by 0x12EEA7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==692839== by 0x12A645: main (TestCaUpdateRules.cpp:18) ==692839== ==692839== Open file descriptor 22: /dev/nvidia0 ==692839== at 0xDBE87A4: open (open64.c:41) ==692839== by 0x1BBCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692839== by 0x1BBCD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692839== by 0x1BB5407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692839== by 0x1BB5D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692839== by 0x1BBD5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692839== by 0x1BC5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692839== by 0x1BA1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692839== by 0x1B9648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692839== by 0x1477E023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692839== by 0x1477EFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692839== by 0x196B846A: ??? ==692839== by 0x14DCFF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692839== by 0x14DABB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692839== by 0x14D5CCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==692839== by 0x14C89EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692839== by 0x196A6F03: ??? ==692839== by 0x14CBE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692839== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692839== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692839== by 0x10129D38: PetscInitialize (pinit.c:924) ==692839== by 0xD4A02DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==692839== by 0xD4A032D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==692839== by 0x132B46: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==692839== by 0x12BE43: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==692839== by 0x12E998: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==692839== by 0x12E893: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==692839== by 0x12EEA7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==692839== by 0x12A645: main (TestCaUpdateRules.cpp:18) ==692839== ==692839== Open file descriptor 21: /dev/nvidia0 ==692839== at 0xDBE87A4: open (open64.c:41) ==692839== by 0x1BBCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692839== by 0x1BBCC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692839== by 0x1BB5DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692839== by 0x1BBD54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692839== by 0x1BC5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692839== by 0x1BA1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692839== by 0x1B9648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692839== by 0x1477E023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692839== by 0x1477EFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692839== by 0x196B846A: ??? ==692839== by 0x14DCFF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692839== by 0x14DABB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692839== by 0x14D5CCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==692839== by 0x14C89EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692839== by 0x196A6F03: ??? ==692839== by 0x14CBE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692839== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692839== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692839== by 0x10129D38: PetscInitialize (pinit.c:924) ==692839== by 0xD4A02DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==692839== by 0xD4A032D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==692839== by 0x132B46: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==692839== by 0x12BE43: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==692839== by 0x12E998: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==692839== by 0x12E893: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==692839== by 0x12EEA7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==692839== by 0x12A645: main (TestCaUpdateRules.cpp:18) ==692839== ==692839== Open file descriptor 20: /dev/nvidia-uvm ==692839== at 0xDBE87A4: open (open64.c:41) ==692839== by 0x1BA36F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692839== by 0x1BA1A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692839== by 0x1B9648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692839== by 0x1477E023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692839== by 0x1477EFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692839== by 0x196B846A: ??? ==692839== by 0x14DCFF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692839== by 0x14DABB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692839== by 0x14D5CCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==692839== by 0x14C89EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692839== by 0x196A6F03: ??? ==692839== by 0x14CBE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692839== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692839== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692839== by 0x10129D38: PetscInitialize (pinit.c:924) ==692839== by 0xD4A02DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==692839== by 0xD4A032D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==692839== by 0x132B46: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==692839== by 0x12BE43: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==692839== by 0x12E998: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==692839== by 0x12E893: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==692839== by 0x12EEA7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==692839== by 0x12A645: main (TestCaUpdateRules.cpp:18) ==692839== ==692839== Open file descriptor 19: /dev/nvidiactl ==692839== at 0xDBE87A4: open (open64.c:41) ==692839== by 0x1BBCB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692839== by 0x1BBD08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692839== by 0x1BA1A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692839== by 0x1B9648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692839== by 0x1477E023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692839== by 0x1477EFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692839== by 0x196B846A: ??? ==692839== by 0x14DCFF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692839== by 0x14DABB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692839== by 0x14D5CCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==692839== by 0x14C89EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692839== by 0x196A6F03: ??? ==692839== by 0x14CBE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692839== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692839== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692839== by 0x10129D38: PetscInitialize (pinit.c:924) ==692839== by 0xD4A02DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==692839== by 0xD4A032D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==692839== by 0x132B46: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==692839== by 0x12BE43: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==692839== by 0x12E998: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==692839== by 0x12E893: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==692839== by 0x12EEA7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==692839== by 0x12A645: main (TestCaUpdateRules.cpp:18) ==692839== ==692839== Open file descriptor 12: ==692839== at 0xDBE926D: pipe (pipe.c:29) ==692839== by 0x196A607D: ??? ==692839== by 0x14CBE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692839== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692839== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692839== by 0x10129D38: PetscInitialize (pinit.c:924) ==692839== by 0xD4A02DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==692839== by 0xD4A032D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==692839== by 0x132B46: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==692839== by 0x12BE43: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==692839== by 0x12E998: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==692839== by 0x12E893: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==692839== by 0x12EEA7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==692839== by 0x12A645: main (TestCaUpdateRules.cpp:18) ==692839== ==692839== Open file descriptor 8: /dev/shm/open_mpi.0000 ==692839== at 0xDBEDC0C: __open_nocancel (open64_nocancel.c:39) ==692839== by 0xDB71BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==692839== by 0xD4D5822: ??? ==692839== by 0xD4D596F: ??? ==692839== by 0x14D636DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==692839== by 0x14D63938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==692839== by 0x14D19922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==692839== by 0x14CBE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692839== by 0x11499418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692839== by 0x11432D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692839== by 0x10129D38: PetscInitialize (pinit.c:924) ==692839== by 0xD4A02DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==692839== by 0xD4A032D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==692839== by 0x132B46: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==692839== by 0x12BE43: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==692839== by 0x12E998: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==692839== by 0x12E893: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==692839== by 0x12EEA7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==692839== by 0x12A645: main (TestCaUpdateRules.cpp:18) ==692839== ==692839== Open file descriptor 116: ==692839== ==692839== ==692839== Open file descriptor 113: ==692839== ==692839== ==692839== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCaUpdateRules_valgrind.txt ==692839== ==692839== ==692839== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==692839== ==692839== ==692839== ==692839== HEAP SUMMARY: ==692839== in use at exit: 1,875,850 bytes in 11,739 blocks ==692839== total heap usage: 64,263 allocs, 52,524 frees, 1,533,812,008 bytes allocated ==692839== ==692839== LEAK SUMMARY: ==692839== definitely lost: 0 bytes in 0 blocks ==692839== indirectly lost: 0 bytes in 0 blocks ==692839== possibly lost: 0 bytes in 0 blocks ==692839== still reachable: 56 bytes in 3 blocks ==692839== suppressed: 1,875,794 bytes in 11,736 blocks ==692839== Reachable blocks (those to which a pointer was found) are not shown. ==692839== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==692839== ==692839== For lists of detected and suppressed errors, rerun with: -s ==692839== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 53 from 53)