==708840== Memcheck, a memory error detector ==708840== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==708840== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==708840== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCardiacElectroMechanicsProblem -malloc_debug -malloc_dump -memory_info ==708840== Parent PID: 691175 ==708840== ==708840== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==708840== This could cause spurious value errors to appear. ==708840== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==708840== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==708840== This could cause spurious value errors to appear. ==708840== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==708840== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==708840== This could cause spurious value errors to appear. ==708840== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==708840== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==708840== This could cause spurious value errors to appear. ==708840== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==708840== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==708840== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==708840== Warning: set address range perms: large range [0x1771f000, 0x3771e000) (noaccess) ==708840== ==708840== FILE DESCRIPTORS: 14 open (3 std) at exit. ==708840== Open file descriptor 23: /dev/nvidia0 ==708840== at 0xABF37A4: open (open64.c:41) ==708840== by 0x167CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708840== by 0x167CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708840== by 0x16866B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708840== by 0x16754026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708840== by 0x1675D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708840== by 0x167D5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708840== by 0x1685FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708840== by 0x1661A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708840== by 0x165648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708840== by 0xF7C2023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==708840== by 0xF7C2FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==708840== by 0x1433046A: ??? ==708840== by 0xDA6FF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==708840== by 0xDA4BB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==708840== by 0xD9FCCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==708840== by 0xD929EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==708840== by 0x1431EF03: ??? ==708840== by 0xD95E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==708840== by 0xA3FB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==708840== by 0xA394D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==708840== by 0xADFCD38: PetscInitialize (pinit.c:924) ==708840== by 0xA2B32DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==708840== by 0xA2B332D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==708840== by 0x1331FE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==708840== by 0x12C2AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==708840== by 0x12F672: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==708840== by 0x12F512: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==708840== by 0x12FBA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==708840== by 0x12A6D5: main (TestCardiacElectroMechanicsProblem.cpp:19) ==708840== ==708840== Open file descriptor 22: /dev/nvidia0 ==708840== at 0xABF37A4: open (open64.c:41) ==708840== by 0x167CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708840== by 0x167CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708840== by 0x1675407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708840== by 0x1675D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708840== by 0x167D5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708840== by 0x1685FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708840== by 0x1661A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708840== by 0x165648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708840== by 0xF7C2023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==708840== by 0xF7C2FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==708840== by 0x1433046A: ??? ==708840== by 0xDA6FF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==708840== by 0xDA4BB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==708840== by 0xD9FCCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==708840== by 0xD929EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==708840== by 0x1431EF03: ??? ==708840== by 0xD95E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==708840== by 0xA3FB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==708840== by 0xA394D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==708840== by 0xADFCD38: PetscInitialize (pinit.c:924) ==708840== by 0xA2B32DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==708840== by 0xA2B332D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==708840== by 0x1331FE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==708840== by 0x12C2AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==708840== by 0x12F672: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==708840== by 0x12F512: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==708840== by 0x12FBA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==708840== by 0x12A6D5: main (TestCardiacElectroMechanicsProblem.cpp:19) ==708840== ==708840== Open file descriptor 21: /dev/nvidia0 ==708840== at 0xABF37A4: open (open64.c:41) ==708840== by 0x167CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708840== by 0x167CC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708840== by 0x1675DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708840== by 0x167D54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708840== by 0x1685FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708840== by 0x1661A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708840== by 0x165648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708840== by 0xF7C2023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==708840== by 0xF7C2FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==708840== by 0x1433046A: ??? ==708840== by 0xDA6FF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==708840== by 0xDA4BB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==708840== by 0xD9FCCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==708840== by 0xD929EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==708840== by 0x1431EF03: ??? ==708840== by 0xD95E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==708840== by 0xA3FB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==708840== by 0xA394D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==708840== by 0xADFCD38: PetscInitialize (pinit.c:924) ==708840== by 0xA2B32DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==708840== by 0xA2B332D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==708840== by 0x1331FE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==708840== by 0x12C2AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==708840== by 0x12F672: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==708840== by 0x12F512: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==708840== by 0x12FBA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==708840== by 0x12A6D5: main (TestCardiacElectroMechanicsProblem.cpp:19) ==708840== ==708840== Open file descriptor 20: /dev/nvidia-uvm ==708840== at 0xABF37A4: open (open64.c:41) ==708840== by 0x16636F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708840== by 0x1661A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708840== by 0x165648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708840== by 0xF7C2023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==708840== by 0xF7C2FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==708840== by 0x1433046A: ??? ==708840== by 0xDA6FF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==708840== by 0xDA4BB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==708840== by 0xD9FCCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==708840== by 0xD929EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==708840== by 0x1431EF03: ??? ==708840== by 0xD95E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==708840== by 0xA3FB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==708840== by 0xA394D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==708840== by 0xADFCD38: PetscInitialize (pinit.c:924) ==708840== by 0xA2B32DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==708840== by 0xA2B332D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==708840== by 0x1331FE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==708840== by 0x12C2AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==708840== by 0x12F672: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==708840== by 0x12F512: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==708840== by 0x12FBA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==708840== by 0x12A6D5: main (TestCardiacElectroMechanicsProblem.cpp:19) ==708840== ==708840== Open file descriptor 19: /dev/nvidiactl ==708840== at 0xABF37A4: open (open64.c:41) ==708840== by 0x167CB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708840== by 0x167D08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708840== by 0x1661A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708840== by 0x165648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708840== by 0xF7C2023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==708840== by 0xF7C2FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==708840== by 0x1433046A: ??? ==708840== by 0xDA6FF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==708840== by 0xDA4BB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==708840== by 0xD9FCCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==708840== by 0xD929EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==708840== by 0x1431EF03: ??? ==708840== by 0xD95E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==708840== by 0xA3FB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==708840== by 0xA394D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==708840== by 0xADFCD38: PetscInitialize (pinit.c:924) ==708840== by 0xA2B32DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==708840== by 0xA2B332D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==708840== by 0x1331FE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==708840== by 0x12C2AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==708840== by 0x12F672: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==708840== by 0x12F512: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==708840== by 0x12FBA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==708840== by 0x12A6D5: main (TestCardiacElectroMechanicsProblem.cpp:19) ==708840== ==708840== Open file descriptor 12: ==708840== at 0xABF426D: pipe (pipe.c:29) ==708840== by 0x1431E07D: ??? ==708840== by 0xD95E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==708840== by 0xA3FB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==708840== by 0xA394D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==708840== by 0xADFCD38: PetscInitialize (pinit.c:924) ==708840== by 0xA2B32DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==708840== by 0xA2B332D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==708840== by 0x1331FE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==708840== by 0x12C2AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==708840== by 0x12F672: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==708840== by 0x12F512: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==708840== by 0x12FBA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==708840== by 0x12A6D5: main (TestCardiacElectroMechanicsProblem.cpp:19) ==708840== ==708840== Open file descriptor 8: /dev/shm/open_mpi.0000 ==708840== at 0xABF8C0C: __open_nocancel (open64_nocancel.c:39) ==708840== by 0xAB7CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==708840== by 0xA2E8822: ??? ==708840== by 0xA2E896F: ??? ==708840== by 0xDA036DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==708840== by 0xDA03938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==708840== by 0xD9B9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==708840== by 0xD95E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==708840== by 0xA3FB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==708840== by 0xA394D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==708840== by 0xADFCD38: PetscInitialize (pinit.c:924) ==708840== by 0xA2B32DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==708840== by 0xA2B332D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==708840== by 0x1331FE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==708840== by 0x12C2AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==708840== by 0x12F672: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==708840== by 0x12F512: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==708840== by 0x12FBA9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==708840== by 0x12A6D5: main (TestCardiacElectroMechanicsProblem.cpp:19) ==708840== ==708840== Open file descriptor 116: ==708840== ==708840== ==708840== Open file descriptor 113: ==708840== ==708840== ==708840== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCardiacElectroMechanicsProblem_valgrind.txt ==708840== ==708840== ==708840== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==708840== ==708840== ==708840== ==708840== HEAP SUMMARY: ==708840== in use at exit: 1,876,278 bytes in 11,748 blocks ==708840== total heap usage: 594,246 allocs, 582,498 frees, 1,679,379,248 bytes allocated ==708840== ==708840== LEAK SUMMARY: ==708840== definitely lost: 0 bytes in 0 blocks ==708840== indirectly lost: 0 bytes in 0 blocks ==708840== possibly lost: 0 bytes in 0 blocks ==708840== still reachable: 24 bytes in 2 blocks ==708840== suppressed: 1,876,254 bytes in 11,746 blocks ==708840== Reachable blocks (those to which a pointer was found) are not shown. ==708840== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==708840== ==708840== For lists of detected and suppressed errors, rerun with: -s ==708840== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 95 from 54)