==707860== Memcheck, a memory error detector ==707860== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==707860== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==707860== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestConvergenceTester -malloc_debug -malloc_dump -memory_info ==707860== Parent PID: 691175 ==707860== ==707860== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==707860== This could cause spurious value errors to appear. ==707860== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==707860== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==707860== This could cause spurious value errors to appear. ==707860== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==707860== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==707860== This could cause spurious value errors to appear. ==707860== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==707860== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==707860== This could cause spurious value errors to appear. ==707860== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==707860== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==707860== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==707860== Warning: set address range perms: large range [0x1771f000, 0x3771e000) (noaccess) ==707860== ==707860== FILE DESCRIPTORS: 14 open (3 std) at exit. ==707860== Open file descriptor 23: /dev/nvidia0 ==707860== at 0xAC487A4: open (open64.c:41) ==707860== by 0x167CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707860== by 0x167CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707860== by 0x16866B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707860== by 0x16754026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707860== by 0x1675D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707860== by 0x167D5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707860== by 0x1685FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707860== by 0x1661A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707860== by 0x165648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707860== by 0xF5F0023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==707860== by 0xF5F0FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==707860== by 0x1433046A: ??? ==707860== by 0xFC41F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==707860== by 0xFC1DB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==707860== by 0xFBCECB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==707860== by 0xFAFBEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==707860== by 0x1431EF03: ??? ==707860== by 0xFB304CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==707860== by 0xC343418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707860== by 0xC2DCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707860== by 0xAFD3D38: PetscInitialize (pinit.c:924) ==707860== by 0xA4412DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==707860== by 0xA44132D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==707860== by 0x121D76: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==707860== by 0x11CDF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==707860== by 0x11F8CA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==707860== by 0x11F7C5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==707860== by 0x11FDD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==707860== by 0x11B5F5: main (TestConvergenceTester.cpp:18) ==707860== ==707860== Open file descriptor 22: /dev/nvidia0 ==707860== at 0xAC487A4: open (open64.c:41) ==707860== by 0x167CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707860== by 0x167CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707860== by 0x1675407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707860== by 0x1675D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707860== by 0x167D5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707860== by 0x1685FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707860== by 0x1661A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707860== by 0x165648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707860== by 0xF5F0023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==707860== by 0xF5F0FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==707860== by 0x1433046A: ??? ==707860== by 0xFC41F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==707860== by 0xFC1DB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==707860== by 0xFBCECB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==707860== by 0xFAFBEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==707860== by 0x1431EF03: ??? ==707860== by 0xFB304CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==707860== by 0xC343418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707860== by 0xC2DCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707860== by 0xAFD3D38: PetscInitialize (pinit.c:924) ==707860== by 0xA4412DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==707860== by 0xA44132D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==707860== by 0x121D76: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==707860== by 0x11CDF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==707860== by 0x11F8CA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==707860== by 0x11F7C5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==707860== by 0x11FDD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==707860== by 0x11B5F5: main (TestConvergenceTester.cpp:18) ==707860== ==707860== Open file descriptor 21: /dev/nvidia0 ==707860== at 0xAC487A4: open (open64.c:41) ==707860== by 0x167CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707860== by 0x167CC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707860== by 0x1675DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707860== by 0x167D54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707860== by 0x1685FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707860== by 0x1661A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707860== by 0x165648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707860== by 0xF5F0023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==707860== by 0xF5F0FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==707860== by 0x1433046A: ??? ==707860== by 0xFC41F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==707860== by 0xFC1DB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==707860== by 0xFBCECB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==707860== by 0xFAFBEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==707860== by 0x1431EF03: ??? ==707860== by 0xFB304CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==707860== by 0xC343418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707860== by 0xC2DCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707860== by 0xAFD3D38: PetscInitialize (pinit.c:924) ==707860== by 0xA4412DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==707860== by 0xA44132D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==707860== by 0x121D76: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==707860== by 0x11CDF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==707860== by 0x11F8CA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==707860== by 0x11F7C5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==707860== by 0x11FDD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==707860== by 0x11B5F5: main (TestConvergenceTester.cpp:18) ==707860== ==707860== Open file descriptor 20: /dev/nvidia-uvm ==707860== at 0xAC487A4: open (open64.c:41) ==707860== by 0x16636F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707860== by 0x1661A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707860== by 0x165648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707860== by 0xF5F0023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==707860== by 0xF5F0FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==707860== by 0x1433046A: ??? ==707860== by 0xFC41F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==707860== by 0xFC1DB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==707860== by 0xFBCECB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==707860== by 0xFAFBEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==707860== by 0x1431EF03: ??? ==707860== by 0xFB304CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==707860== by 0xC343418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707860== by 0xC2DCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707860== by 0xAFD3D38: PetscInitialize (pinit.c:924) ==707860== by 0xA4412DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==707860== by 0xA44132D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==707860== by 0x121D76: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==707860== by 0x11CDF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==707860== by 0x11F8CA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==707860== by 0x11F7C5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==707860== by 0x11FDD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==707860== by 0x11B5F5: main (TestConvergenceTester.cpp:18) ==707860== ==707860== Open file descriptor 19: /dev/nvidiactl ==707860== at 0xAC487A4: open (open64.c:41) ==707860== by 0x167CB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707860== by 0x167D08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707860== by 0x1661A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707860== by 0x165648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707860== by 0xF5F0023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==707860== by 0xF5F0FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==707860== by 0x1433046A: ??? ==707860== by 0xFC41F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==707860== by 0xFC1DB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==707860== by 0xFBCECB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==707860== by 0xFAFBEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==707860== by 0x1431EF03: ??? ==707860== by 0xFB304CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==707860== by 0xC343418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707860== by 0xC2DCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707860== by 0xAFD3D38: PetscInitialize (pinit.c:924) ==707860== by 0xA4412DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==707860== by 0xA44132D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==707860== by 0x121D76: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==707860== by 0x11CDF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==707860== by 0x11F8CA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==707860== by 0x11F7C5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==707860== by 0x11FDD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==707860== by 0x11B5F5: main (TestConvergenceTester.cpp:18) ==707860== ==707860== Open file descriptor 12: ==707860== at 0xAC4926D: pipe (pipe.c:29) ==707860== by 0x1431E07D: ??? ==707860== by 0xFB304CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==707860== by 0xC343418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707860== by 0xC2DCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707860== by 0xAFD3D38: PetscInitialize (pinit.c:924) ==707860== by 0xA4412DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==707860== by 0xA44132D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==707860== by 0x121D76: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==707860== by 0x11CDF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==707860== by 0x11F8CA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==707860== by 0x11F7C5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==707860== by 0x11FDD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==707860== by 0x11B5F5: main (TestConvergenceTester.cpp:18) ==707860== ==707860== Open file descriptor 8: /dev/shm/open_mpi.0000 ==707860== at 0xAC4DC0C: __open_nocancel (open64_nocancel.c:39) ==707860== by 0xABD1BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==707860== by 0xA476822: ??? ==707860== by 0xA47696F: ??? ==707860== by 0xFBD56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==707860== by 0xFBD5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==707860== by 0xFB8B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==707860== by 0xFB302DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==707860== by 0xC343418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707860== by 0xC2DCD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707860== by 0xAFD3D38: PetscInitialize (pinit.c:924) ==707860== by 0xA4412DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==707860== by 0xA44132D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==707860== by 0x121D76: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==707860== by 0x11CDF3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==707860== by 0x11F8CA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==707860== by 0x11F7C5: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==707860== by 0x11FDD9: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==707860== by 0x11B5F5: main (TestConvergenceTester.cpp:18) ==707860== ==707860== Open file descriptor 116: ==707860== ==707860== ==707860== Open file descriptor 113: ==707860== ==707860== ==707860== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestConvergenceTester_valgrind.txt ==707860== ==707860== ==707860== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==707860== ==707860== ==707860== ==707860== HEAP SUMMARY: ==707860== in use at exit: 1,876,329 bytes in 11,748 blocks ==707860== total heap usage: 1,818,802 allocs, 1,807,054 frees, 2,108,822,912 bytes allocated ==707860== ==707860== LEAK SUMMARY: ==707860== definitely lost: 0 bytes in 0 blocks ==707860== indirectly lost: 0 bytes in 0 blocks ==707860== possibly lost: 0 bytes in 0 blocks ==707860== still reachable: 24 bytes in 2 blocks ==707860== suppressed: 1,876,305 bytes in 11,746 blocks ==707860== Reachable blocks (those to which a pointer was found) are not shown. ==707860== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==707860== ==707860== For lists of detected and suppressed errors, rerun with: -s ==707860== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 137 from 54)