==707141== Memcheck, a memory error detector ==707141== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==707141== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==707141== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation1d -malloc_debug -malloc_dump -memory_info ==707141== Parent PID: 691175 ==707141== ==707141== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==707141== This could cause spurious value errors to appear. ==707141== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==707141== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==707141== This could cause spurious value errors to appear. ==707141== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==707141== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==707141== This could cause spurious value errors to appear. ==707141== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==707141== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==707141== This could cause spurious value errors to appear. ==707141== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==707141== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==707141== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==707141== Warning: set address range perms: large range [0x1e71f000, 0x3e71e000) (noaccess) ==707141== ==707141== FILE DESCRIPTORS: 14 open (3 std) at exit. ==707141== Open file descriptor 23: /dev/nvidia0 ==707141== at 0x125B17A4: open (open64.c:41) ==707141== by 0x1D7CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707141== by 0x1D7CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707141== by 0x1D866B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707141== by 0x1D754026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707141== by 0x1D75D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707141== by 0x1D7D5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707141== by 0x1D85FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707141== by 0x1D61A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707141== by 0x1D5648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707141== by 0x12FD3023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==707141== by 0x12FD3FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==707141== by 0x1B37846A: ??? ==707141== by 0x165E5F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==707141== by 0x165C1B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==707141== by 0x16572CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==707141== by 0x1649DEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==707141== by 0x1B366F03: ??? ==707141== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==707141== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707141== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707141== by 0x10B4AD38: PetscInitialize (pinit.c:924) ==707141== by 0x109B42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==707141== by 0x109B432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==707141== by 0x2254A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==707141== by 0x21CB9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==707141== by 0x22067C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==707141== by 0x220577: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==707141== by 0x220B8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==707141== by 0x21B395: main (TestCryptSimulation1d.cpp:18) ==707141== ==707141== Open file descriptor 22: /dev/nvidia0 ==707141== at 0x125B17A4: open (open64.c:41) ==707141== by 0x1D7CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707141== by 0x1D7CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707141== by 0x1D75407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707141== by 0x1D75D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707141== by 0x1D7D5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707141== by 0x1D85FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707141== by 0x1D61A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707141== by 0x1D5648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707141== by 0x12FD3023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==707141== by 0x12FD3FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==707141== by 0x1B37846A: ??? ==707141== by 0x165E5F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==707141== by 0x165C1B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==707141== by 0x16572CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==707141== by 0x1649DEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==707141== by 0x1B366F03: ??? ==707141== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==707141== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707141== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707141== by 0x10B4AD38: PetscInitialize (pinit.c:924) ==707141== by 0x109B42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==707141== by 0x109B432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==707141== by 0x2254A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==707141== by 0x21CB9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==707141== by 0x22067C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==707141== by 0x220577: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==707141== by 0x220B8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==707141== by 0x21B395: main (TestCryptSimulation1d.cpp:18) ==707141== ==707141== Open file descriptor 21: /dev/nvidia0 ==707141== at 0x125B17A4: open (open64.c:41) ==707141== by 0x1D7CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707141== by 0x1D7CC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707141== by 0x1D75DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707141== by 0x1D7D54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707141== by 0x1D85FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707141== by 0x1D61A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707141== by 0x1D5648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707141== by 0x12FD3023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==707141== by 0x12FD3FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==707141== by 0x1B37846A: ??? ==707141== by 0x165E5F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==707141== by 0x165C1B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==707141== by 0x16572CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==707141== by 0x1649DEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==707141== by 0x1B366F03: ??? ==707141== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==707141== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707141== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707141== by 0x10B4AD38: PetscInitialize (pinit.c:924) ==707141== by 0x109B42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==707141== by 0x109B432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==707141== by 0x2254A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==707141== by 0x21CB9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==707141== by 0x22067C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==707141== by 0x220577: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==707141== by 0x220B8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==707141== by 0x21B395: main (TestCryptSimulation1d.cpp:18) ==707141== ==707141== Open file descriptor 20: /dev/nvidia-uvm ==707141== at 0x125B17A4: open (open64.c:41) ==707141== by 0x1D636F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707141== by 0x1D61A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707141== by 0x1D5648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707141== by 0x12FD3023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==707141== by 0x12FD3FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==707141== by 0x1B37846A: ??? ==707141== by 0x165E5F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==707141== by 0x165C1B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==707141== by 0x16572CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==707141== by 0x1649DEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==707141== by 0x1B366F03: ??? ==707141== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==707141== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707141== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707141== by 0x10B4AD38: PetscInitialize (pinit.c:924) ==707141== by 0x109B42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==707141== by 0x109B432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==707141== by 0x2254A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==707141== by 0x21CB9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==707141== by 0x22067C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==707141== by 0x220577: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==707141== by 0x220B8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==707141== by 0x21B395: main (TestCryptSimulation1d.cpp:18) ==707141== ==707141== Open file descriptor 19: /dev/nvidiactl ==707141== at 0x125B17A4: open (open64.c:41) ==707141== by 0x1D7CB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707141== by 0x1D7D08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707141== by 0x1D61A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707141== by 0x1D5648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707141== by 0x12FD3023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==707141== by 0x12FD3FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==707141== by 0x1B37846A: ??? ==707141== by 0x165E5F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==707141== by 0x165C1B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==707141== by 0x16572CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==707141== by 0x1649DEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==707141== by 0x1B366F03: ??? ==707141== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==707141== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707141== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707141== by 0x10B4AD38: PetscInitialize (pinit.c:924) ==707141== by 0x109B42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==707141== by 0x109B432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==707141== by 0x2254A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==707141== by 0x21CB9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==707141== by 0x22067C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==707141== by 0x220577: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==707141== by 0x220B8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==707141== by 0x21B395: main (TestCryptSimulation1d.cpp:18) ==707141== ==707141== Open file descriptor 12: ==707141== at 0x125B226D: pipe (pipe.c:29) ==707141== by 0x1B36607D: ??? ==707141== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==707141== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707141== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707141== by 0x10B4AD38: PetscInitialize (pinit.c:924) ==707141== by 0x109B42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==707141== by 0x109B432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==707141== by 0x2254A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==707141== by 0x21CB9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==707141== by 0x22067C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==707141== by 0x220577: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==707141== by 0x220B8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==707141== by 0x21B395: main (TestCryptSimulation1d.cpp:18) ==707141== ==707141== Open file descriptor 8: /dev/shm/open_mpi.0000 ==707141== at 0x125B6C0C: __open_nocancel (open64_nocancel.c:39) ==707141== by 0x1253ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==707141== by 0x109E9822: ??? ==707141== by 0x109E996F: ??? ==707141== by 0x165796DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==707141== by 0x16579938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==707141== by 0x1652F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==707141== by 0x164D22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==707141== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707141== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707141== by 0x10B4AD38: PetscInitialize (pinit.c:924) ==707141== by 0x109B42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==707141== by 0x109B432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==707141== by 0x2254A3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==707141== by 0x21CB9F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==707141== by 0x22067C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==707141== by 0x220577: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==707141== by 0x220B8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==707141== by 0x21B395: main (TestCryptSimulation1d.cpp:18) ==707141== ==707141== Open file descriptor 116: ==707141== ==707141== ==707141== Open file descriptor 113: ==707141== ==707141== ==707141== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation1d_valgrind.txt ==707141== ==707141== ==707141== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==707141== ==707141== ==707141== ==707141== HEAP SUMMARY: ==707141== in use at exit: 1,875,935 bytes in 11,735 blocks ==707141== total heap usage: 4,124,071 allocs, 4,112,336 frees, 2,171,797,656 bytes allocated ==707141== ==707141== LEAK SUMMARY: ==707141== definitely lost: 0 bytes in 0 blocks ==707141== indirectly lost: 0 bytes in 0 blocks ==707141== possibly lost: 0 bytes in 0 blocks ==707141== still reachable: 56 bytes in 3 blocks ==707141== suppressed: 1,875,879 bytes in 11,732 blocks ==707141== Reachable blocks (those to which a pointer was found) are not shown. ==707141== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==707141== ==707141== For lists of detected and suppressed errors, rerun with: -s ==707141== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 50 from 50)