==707087== Memcheck, a memory error detector ==707087== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==707087== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==707087== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulationBoundaryCondition -malloc_debug -malloc_dump -memory_info ==707087== Parent PID: 691175 ==707087== ==707087== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==707087== This could cause spurious value errors to appear. ==707087== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==707087== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==707087== This could cause spurious value errors to appear. ==707087== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==707087== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==707087== This could cause spurious value errors to appear. ==707087== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==707087== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==707087== This could cause spurious value errors to appear. ==707087== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==707087== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==707087== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==707087== Warning: set address range perms: large range [0x1e71f000, 0x3e71e000) (noaccess) ==707087== ==707087== FILE DESCRIPTORS: 14 open (3 std) at exit. ==707087== Open file descriptor 23: /dev/nvidia0 ==707087== at 0x125B17A4: open (open64.c:41) ==707087== by 0x1D7CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707087== by 0x1D7CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707087== by 0x1D866B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707087== by 0x1D754026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707087== by 0x1D75D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707087== by 0x1D7D5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707087== by 0x1D85FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707087== by 0x1D61A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707087== by 0x1D5648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707087== by 0x12FD3023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==707087== by 0x12FD3FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==707087== by 0x1B37846A: ??? ==707087== by 0x165E5F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==707087== by 0x165C1B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==707087== by 0x16572CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==707087== by 0x1649DEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==707087== by 0x1B366F03: ??? ==707087== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==707087== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707087== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707087== by 0x10B4AD38: PetscInitialize (pinit.c:924) ==707087== by 0x109B42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==707087== by 0x109B432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==707087== by 0x14364B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==707087== by 0x13C4E3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==707087== by 0x13F2A4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==707087== by 0x13F19F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==707087== by 0x13F7B3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==707087== by 0x13ACE5: main (TestCryptSimulationBoundaryCondition.cpp:18) ==707087== ==707087== Open file descriptor 22: /dev/nvidia0 ==707087== at 0x125B17A4: open (open64.c:41) ==707087== by 0x1D7CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707087== by 0x1D7CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707087== by 0x1D75407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707087== by 0x1D75D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707087== by 0x1D7D5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707087== by 0x1D85FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707087== by 0x1D61A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707087== by 0x1D5648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707087== by 0x12FD3023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==707087== by 0x12FD3FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==707087== by 0x1B37846A: ??? ==707087== by 0x165E5F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==707087== by 0x165C1B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==707087== by 0x16572CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==707087== by 0x1649DEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==707087== by 0x1B366F03: ??? ==707087== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==707087== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707087== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707087== by 0x10B4AD38: PetscInitialize (pinit.c:924) ==707087== by 0x109B42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==707087== by 0x109B432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==707087== by 0x14364B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==707087== by 0x13C4E3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==707087== by 0x13F2A4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==707087== by 0x13F19F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==707087== by 0x13F7B3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==707087== by 0x13ACE5: main (TestCryptSimulationBoundaryCondition.cpp:18) ==707087== ==707087== Open file descriptor 21: /dev/nvidia0 ==707087== at 0x125B17A4: open (open64.c:41) ==707087== by 0x1D7CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707087== by 0x1D7CC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707087== by 0x1D75DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707087== by 0x1D7D54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707087== by 0x1D85FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707087== by 0x1D61A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707087== by 0x1D5648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707087== by 0x12FD3023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==707087== by 0x12FD3FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==707087== by 0x1B37846A: ??? ==707087== by 0x165E5F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==707087== by 0x165C1B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==707087== by 0x16572CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==707087== by 0x1649DEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==707087== by 0x1B366F03: ??? ==707087== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==707087== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707087== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707087== by 0x10B4AD38: PetscInitialize (pinit.c:924) ==707087== by 0x109B42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==707087== by 0x109B432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==707087== by 0x14364B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==707087== by 0x13C4E3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==707087== by 0x13F2A4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==707087== by 0x13F19F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==707087== by 0x13F7B3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==707087== by 0x13ACE5: main (TestCryptSimulationBoundaryCondition.cpp:18) ==707087== ==707087== Open file descriptor 20: /dev/nvidia-uvm ==707087== at 0x125B17A4: open (open64.c:41) ==707087== by 0x1D636F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707087== by 0x1D61A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707087== by 0x1D5648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707087== by 0x12FD3023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==707087== by 0x12FD3FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==707087== by 0x1B37846A: ??? ==707087== by 0x165E5F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==707087== by 0x165C1B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==707087== by 0x16572CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==707087== by 0x1649DEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==707087== by 0x1B366F03: ??? ==707087== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==707087== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707087== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707087== by 0x10B4AD38: PetscInitialize (pinit.c:924) ==707087== by 0x109B42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==707087== by 0x109B432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==707087== by 0x14364B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==707087== by 0x13C4E3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==707087== by 0x13F2A4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==707087== by 0x13F19F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==707087== by 0x13F7B3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==707087== by 0x13ACE5: main (TestCryptSimulationBoundaryCondition.cpp:18) ==707087== ==707087== Open file descriptor 19: /dev/nvidiactl ==707087== at 0x125B17A4: open (open64.c:41) ==707087== by 0x1D7CB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707087== by 0x1D7D08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707087== by 0x1D61A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707087== by 0x1D5648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==707087== by 0x12FD3023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==707087== by 0x12FD3FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==707087== by 0x1B37846A: ??? ==707087== by 0x165E5F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==707087== by 0x165C1B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==707087== by 0x16572CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==707087== by 0x1649DEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==707087== by 0x1B366F03: ??? ==707087== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==707087== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707087== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707087== by 0x10B4AD38: PetscInitialize (pinit.c:924) ==707087== by 0x109B42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==707087== by 0x109B432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==707087== by 0x14364B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==707087== by 0x13C4E3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==707087== by 0x13F2A4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==707087== by 0x13F19F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==707087== by 0x13F7B3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==707087== by 0x13ACE5: main (TestCryptSimulationBoundaryCondition.cpp:18) ==707087== ==707087== Open file descriptor 12: ==707087== at 0x125B226D: pipe (pipe.c:29) ==707087== by 0x1B36607D: ??? ==707087== by 0x164D24CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==707087== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707087== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707087== by 0x10B4AD38: PetscInitialize (pinit.c:924) ==707087== by 0x109B42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==707087== by 0x109B432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==707087== by 0x14364B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==707087== by 0x13C4E3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==707087== by 0x13F2A4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==707087== by 0x13F19F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==707087== by 0x13F7B3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==707087== by 0x13ACE5: main (TestCryptSimulationBoundaryCondition.cpp:18) ==707087== ==707087== Open file descriptor 8: /dev/shm/open_mpi.0000 ==707087== at 0x125B6C0C: __open_nocancel (open64_nocancel.c:39) ==707087== by 0x1253ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==707087== by 0x109E9822: ??? ==707087== by 0x109E996F: ??? ==707087== by 0x165796DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==707087== by 0x16579938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==707087== by 0x1652F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==707087== by 0x164D22DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==707087== by 0x11EBA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707087== by 0x11E53D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==707087== by 0x10B4AD38: PetscInitialize (pinit.c:924) ==707087== by 0x109B42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==707087== by 0x109B432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==707087== by 0x14364B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==707087== by 0x13C4E3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==707087== by 0x13F2A4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==707087== by 0x13F19F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==707087== by 0x13F7B3: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==707087== by 0x13ACE5: main (TestCryptSimulationBoundaryCondition.cpp:18) ==707087== ==707087== Open file descriptor 116: ==707087== ==707087== ==707087== Open file descriptor 113: ==707087== ==707087== ==707087== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulationBoundaryCondition_valgrind.txt ==707087== ==707087== ==707087== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==707087== ==707087== ==707087== ==707087== HEAP SUMMARY: ==707087== in use at exit: 1,876,072 bytes in 11,740 blocks ==707087== total heap usage: 78,532 allocs, 66,792 frees, 1,537,651,402 bytes allocated ==707087== ==707087== LEAK SUMMARY: ==707087== definitely lost: 0 bytes in 0 blocks ==707087== indirectly lost: 0 bytes in 0 blocks ==707087== possibly lost: 0 bytes in 0 blocks ==707087== still reachable: 136 bytes in 4 blocks ==707087== suppressed: 1,875,936 bytes in 11,736 blocks ==707087== Reachable blocks (those to which a pointer was found) are not shown. ==707087== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==707087== ==707087== For lists of detected and suppressed errors, rerun with: -s ==707087== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 53 from 53)