==692963== Memcheck, a memory error detector ==692963== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==692963== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==692963== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestMeshBasedCellPopulationWithGhostNodes -malloc_debug -malloc_dump -memory_info ==692963== Parent PID: 691175 ==692963== ==692963== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==692963== This could cause spurious value errors to appear. ==692963== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==692963== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==692963== This could cause spurious value errors to appear. ==692963== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==692963== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==692963== This could cause spurious value errors to appear. ==692963== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==692963== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==692963== This could cause spurious value errors to appear. ==692963== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==692963== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==692963== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==692963== Warning: set address range perms: large range [0x1cb1f000, 0x3cb1e000) (noaccess) ==692963== ==692963== FILE DESCRIPTORS: 14 open (3 std) at exit. ==692963== Open file descriptor 23: /dev/nvidia0 ==692963== at 0x10D967A4: open (open64.c:41) ==692963== by 0x1BBCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692963== by 0x1BBCD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692963== by 0x1BC66B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692963== by 0x1BB54026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692963== by 0x1BB5D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692963== by 0x1BBD5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692963== by 0x1BC5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692963== by 0x1BA1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692963== by 0x1B9648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692963== by 0x146D3023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692963== by 0x146D3FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692963== by 0x196B846A: ??? ==692963== by 0x14D24F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692963== by 0x14D00B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692963== by 0x14CB1CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==692963== by 0x14BDEEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692963== by 0x196A6F03: ??? ==692963== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692963== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692963== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692963== by 0xF21DD38: PetscInitialize (pinit.c:924) ==692963== by 0xF0F42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==692963== by 0xF0F432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==692963== by 0x159CA9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==692963== by 0x1521AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==692963== by 0x15565A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==692963== by 0x1554FA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==692963== by 0x155B91: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==692963== by 0x1505D5: main (TestMeshBasedCellPopulationWithGhostNodes.cpp:19) ==692963== ==692963== Open file descriptor 22: /dev/nvidia0 ==692963== at 0x10D967A4: open (open64.c:41) ==692963== by 0x1BBCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692963== by 0x1BBCD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692963== by 0x1BB5407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692963== by 0x1BB5D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692963== by 0x1BBD5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692963== by 0x1BC5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692963== by 0x1BA1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692963== by 0x1B9648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692963== by 0x146D3023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692963== by 0x146D3FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692963== by 0x196B846A: ??? ==692963== by 0x14D24F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692963== by 0x14D00B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692963== by 0x14CB1CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==692963== by 0x14BDEEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692963== by 0x196A6F03: ??? ==692963== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692963== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692963== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692963== by 0xF21DD38: PetscInitialize (pinit.c:924) ==692963== by 0xF0F42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==692963== by 0xF0F432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==692963== by 0x159CA9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==692963== by 0x1521AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==692963== by 0x15565A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==692963== by 0x1554FA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==692963== by 0x155B91: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==692963== by 0x1505D5: main (TestMeshBasedCellPopulationWithGhostNodes.cpp:19) ==692963== ==692963== Open file descriptor 21: /dev/nvidia0 ==692963== at 0x10D967A4: open (open64.c:41) ==692963== by 0x1BBCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692963== by 0x1BBCC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692963== by 0x1BB5DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692963== by 0x1BBD54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692963== by 0x1BC5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692963== by 0x1BA1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692963== by 0x1B9648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692963== by 0x146D3023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692963== by 0x146D3FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692963== by 0x196B846A: ??? ==692963== by 0x14D24F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692963== by 0x14D00B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692963== by 0x14CB1CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==692963== by 0x14BDEEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692963== by 0x196A6F03: ??? ==692963== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692963== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692963== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692963== by 0xF21DD38: PetscInitialize (pinit.c:924) ==692963== by 0xF0F42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==692963== by 0xF0F432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==692963== by 0x159CA9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==692963== by 0x1521AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==692963== by 0x15565A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==692963== by 0x1554FA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==692963== by 0x155B91: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==692963== by 0x1505D5: main (TestMeshBasedCellPopulationWithGhostNodes.cpp:19) ==692963== ==692963== Open file descriptor 20: /dev/nvidia-uvm ==692963== at 0x10D967A4: open (open64.c:41) ==692963== by 0x1BA36F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692963== by 0x1BA1A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692963== by 0x1B9648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692963== by 0x146D3023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692963== by 0x146D3FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692963== by 0x196B846A: ??? ==692963== by 0x14D24F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692963== by 0x14D00B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692963== by 0x14CB1CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==692963== by 0x14BDEEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692963== by 0x196A6F03: ??? ==692963== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692963== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692963== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692963== by 0xF21DD38: PetscInitialize (pinit.c:924) ==692963== by 0xF0F42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==692963== by 0xF0F432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==692963== by 0x159CA9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==692963== by 0x1521AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==692963== by 0x15565A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==692963== by 0x1554FA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==692963== by 0x155B91: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==692963== by 0x1505D5: main (TestMeshBasedCellPopulationWithGhostNodes.cpp:19) ==692963== ==692963== Open file descriptor 19: /dev/nvidiactl ==692963== at 0x10D967A4: open (open64.c:41) ==692963== by 0x1BBCB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692963== by 0x1BBD08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692963== by 0x1BA1A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692963== by 0x1B9648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692963== by 0x146D3023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692963== by 0x146D3FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692963== by 0x196B846A: ??? ==692963== by 0x14D24F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692963== by 0x14D00B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692963== by 0x14CB1CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==692963== by 0x14BDEEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692963== by 0x196A6F03: ??? ==692963== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692963== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692963== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692963== by 0xF21DD38: PetscInitialize (pinit.c:924) ==692963== by 0xF0F42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==692963== by 0xF0F432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==692963== by 0x159CA9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==692963== by 0x1521AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==692963== by 0x15565A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==692963== by 0x1554FA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==692963== by 0x155B91: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==692963== by 0x1505D5: main (TestMeshBasedCellPopulationWithGhostNodes.cpp:19) ==692963== ==692963== Open file descriptor 12: ==692963== at 0x10D9726D: pipe (pipe.c:29) ==692963== by 0x196A607D: ??? ==692963== by 0x14C134CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692963== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692963== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692963== by 0xF21DD38: PetscInitialize (pinit.c:924) ==692963== by 0xF0F42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==692963== by 0xF0F432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==692963== by 0x159CA9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==692963== by 0x1521AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==692963== by 0x15565A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==692963== by 0x1554FA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==692963== by 0x155B91: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==692963== by 0x1505D5: main (TestMeshBasedCellPopulationWithGhostNodes.cpp:19) ==692963== ==692963== Open file descriptor 8: /dev/shm/open_mpi.0000 ==692963== at 0x10D9BC0C: __open_nocancel (open64_nocancel.c:39) ==692963== by 0x10D1FBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==692963== by 0x104A7822: ??? ==692963== by 0x104A796F: ??? ==692963== by 0x14CB86DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==692963== by 0x14CB8938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==692963== by 0x14C6E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==692963== by 0x14C132DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692963== by 0x105B8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692963== by 0x10551D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692963== by 0xF21DD38: PetscInitialize (pinit.c:924) ==692963== by 0xF0F42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==692963== by 0xF0F432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==692963== by 0x159CA9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==692963== by 0x1521AD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==692963== by 0x15565A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==692963== by 0x1554FA: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==692963== by 0x155B91: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==692963== by 0x1505D5: main (TestMeshBasedCellPopulationWithGhostNodes.cpp:19) ==692963== ==692963== Open file descriptor 116: ==692963== ==692963== ==692963== Open file descriptor 113: ==692963== ==692963== ==692963== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMeshBasedCellPopulationWithGhostNodes_valgrind.txt ==692963== ==692963== ==692963== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==692963== ==692963== ==692963== ==692963== HEAP SUMMARY: ==692963== in use at exit: 1,875,906 bytes in 11,739 blocks ==692963== total heap usage: 230,212 allocs, 218,473 frees, 1,558,311,260 bytes allocated ==692963== ==692963== LEAK SUMMARY: ==692963== definitely lost: 0 bytes in 0 blocks ==692963== indirectly lost: 0 bytes in 0 blocks ==692963== possibly lost: 0 bytes in 0 blocks ==692963== still reachable: 56 bytes in 3 blocks ==692963== suppressed: 1,875,850 bytes in 11,736 blocks ==692963== Reachable blocks (those to which a pointer was found) are not shown. ==692963== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==692963== ==692963== For lists of detected and suppressed errors, rerun with: -s ==692963== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 53 from 53)