==709479== Memcheck, a memory error detector ==709479== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==709479== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==709479== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainPurkinjeAssemblersAndSolver -malloc_debug -malloc_dump -memory_info ==709479== Parent PID: 691175 ==709479== ==709479== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==709479== This could cause spurious value errors to appear. ==709479== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==709479== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==709479== This could cause spurious value errors to appear. ==709479== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==709479== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==709479== This could cause spurious value errors to appear. ==709479== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==709479== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==709479== This could cause spurious value errors to appear. ==709479== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==709479== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==709479== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==709479== Warning: set address range perms: large range [0x1771f000, 0x3771e000) (noaccess) ==709479== ==709479== FILE DESCRIPTORS: 14 open (3 std) at exit. ==709479== Open file descriptor 23: /dev/nvidia0 ==709479== at 0xC0577A4: open (open64.c:41) ==709479== by 0x167CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==709479== by 0x167CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==709479== by 0x16866B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==709479== by 0x16754026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==709479== by 0x1675D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==709479== by 0x167D5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==709479== by 0x1685FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==709479== by 0x1661A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==709479== by 0x165648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==709479== by 0xF5A3023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==709479== by 0xF5A3FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==709479== by 0x1433046A: ??? ==709479== by 0xFC41F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==709479== by 0xFC1DB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==709479== by 0xFBCECB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==709479== by 0xFAFBEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==709479== by 0x1431EF03: ??? ==709479== by 0xFB304CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==709479== by 0xC3D2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==709479== by 0xC36BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==709479== by 0xA5FBD38: PetscInitialize (pinit.c:924) ==709479== by 0xA4D02DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==709479== by 0xA4D032D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==709479== by 0x15E3DC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==709479== by 0x1588CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==709479== by 0x15BB54: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==709479== by 0x15B9F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==709479== by 0x15C08B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==709479== by 0x156CF5: main (TestMonodomainPurkinjeAssemblersAndSolver.cpp:19) ==709479== ==709479== Open file descriptor 22: /dev/nvidia0 ==709479== at 0xC0577A4: open (open64.c:41) ==709479== by 0x167CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==709479== by 0x167CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==709479== by 0x1675407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==709479== by 0x1675D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==709479== by 0x167D5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==709479== by 0x1685FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==709479== by 0x1661A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==709479== by 0x165648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==709479== by 0xF5A3023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==709479== by 0xF5A3FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==709479== by 0x1433046A: ??? ==709479== by 0xFC41F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==709479== by 0xFC1DB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==709479== by 0xFBCECB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==709479== by 0xFAFBEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==709479== by 0x1431EF03: ??? ==709479== by 0xFB304CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==709479== by 0xC3D2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==709479== by 0xC36BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==709479== by 0xA5FBD38: PetscInitialize (pinit.c:924) ==709479== by 0xA4D02DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==709479== by 0xA4D032D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==709479== by 0x15E3DC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==709479== by 0x1588CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==709479== by 0x15BB54: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==709479== by 0x15B9F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==709479== by 0x15C08B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==709479== by 0x156CF5: main (TestMonodomainPurkinjeAssemblersAndSolver.cpp:19) ==709479== ==709479== Open file descriptor 21: /dev/nvidia0 ==709479== at 0xC0577A4: open (open64.c:41) ==709479== by 0x167CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==709479== by 0x167CC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==709479== by 0x1675DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==709479== by 0x167D54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==709479== by 0x1685FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==709479== by 0x1661A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==709479== by 0x165648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==709479== by 0xF5A3023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==709479== by 0xF5A3FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==709479== by 0x1433046A: ??? ==709479== by 0xFC41F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==709479== by 0xFC1DB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==709479== by 0xFBCECB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==709479== by 0xFAFBEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==709479== by 0x1431EF03: ??? ==709479== by 0xFB304CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==709479== by 0xC3D2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==709479== by 0xC36BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==709479== by 0xA5FBD38: PetscInitialize (pinit.c:924) ==709479== by 0xA4D02DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==709479== by 0xA4D032D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==709479== by 0x15E3DC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==709479== by 0x1588CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==709479== by 0x15BB54: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==709479== by 0x15B9F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==709479== by 0x15C08B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==709479== by 0x156CF5: main (TestMonodomainPurkinjeAssemblersAndSolver.cpp:19) ==709479== ==709479== Open file descriptor 20: /dev/nvidia-uvm ==709479== at 0xC0577A4: open (open64.c:41) ==709479== by 0x16636F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==709479== by 0x1661A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==709479== by 0x165648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==709479== by 0xF5A3023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==709479== by 0xF5A3FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==709479== by 0x1433046A: ??? ==709479== by 0xFC41F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==709479== by 0xFC1DB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==709479== by 0xFBCECB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==709479== by 0xFAFBEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==709479== by 0x1431EF03: ??? ==709479== by 0xFB304CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==709479== by 0xC3D2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==709479== by 0xC36BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==709479== by 0xA5FBD38: PetscInitialize (pinit.c:924) ==709479== by 0xA4D02DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==709479== by 0xA4D032D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==709479== by 0x15E3DC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==709479== by 0x1588CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==709479== by 0x15BB54: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==709479== by 0x15B9F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==709479== by 0x15C08B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==709479== by 0x156CF5: main (TestMonodomainPurkinjeAssemblersAndSolver.cpp:19) ==709479== ==709479== Open file descriptor 19: /dev/nvidiactl ==709479== at 0xC0577A4: open (open64.c:41) ==709479== by 0x167CB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==709479== by 0x167D08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==709479== by 0x1661A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==709479== by 0x165648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==709479== by 0xF5A3023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==709479== by 0xF5A3FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==709479== by 0x1433046A: ??? ==709479== by 0xFC41F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==709479== by 0xFC1DB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==709479== by 0xFBCECB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==709479== by 0xFAFBEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==709479== by 0x1431EF03: ??? ==709479== by 0xFB304CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==709479== by 0xC3D2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==709479== by 0xC36BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==709479== by 0xA5FBD38: PetscInitialize (pinit.c:924) ==709479== by 0xA4D02DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==709479== by 0xA4D032D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==709479== by 0x15E3DC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==709479== by 0x1588CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==709479== by 0x15BB54: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==709479== by 0x15B9F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==709479== by 0x15C08B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==709479== by 0x156CF5: main (TestMonodomainPurkinjeAssemblersAndSolver.cpp:19) ==709479== ==709479== Open file descriptor 12: ==709479== at 0xC05826D: pipe (pipe.c:29) ==709479== by 0x1431E07D: ??? ==709479== by 0xFB304CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==709479== by 0xC3D2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==709479== by 0xC36BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==709479== by 0xA5FBD38: PetscInitialize (pinit.c:924) ==709479== by 0xA4D02DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==709479== by 0xA4D032D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==709479== by 0x15E3DC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==709479== by 0x1588CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==709479== by 0x15BB54: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==709479== by 0x15B9F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==709479== by 0x15C08B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==709479== by 0x156CF5: main (TestMonodomainPurkinjeAssemblersAndSolver.cpp:19) ==709479== ==709479== Open file descriptor 8: /dev/shm/open_mpi.0000 ==709479== at 0xC05CC0C: __open_nocancel (open64_nocancel.c:39) ==709479== by 0xBFE0BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==709479== by 0xB885822: ??? ==709479== by 0xB88596F: ??? ==709479== by 0xFBD56DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==709479== by 0xFBD5938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==709479== by 0xFB8B922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==709479== by 0xFB302DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==709479== by 0xC3D2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==709479== by 0xC36BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==709479== by 0xA5FBD38: PetscInitialize (pinit.c:924) ==709479== by 0xA4D02DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==709479== by 0xA4D032D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==709479== by 0x15E3DC: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==709479== by 0x1588CD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==709479== by 0x15BB54: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==709479== by 0x15B9F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==709479== by 0x15C08B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==709479== by 0x156CF5: main (TestMonodomainPurkinjeAssemblersAndSolver.cpp:19) ==709479== ==709479== Open file descriptor 116: ==709479== ==709479== ==709479== Open file descriptor 113: ==709479== ==709479== ==709479== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainPurkinjeAssemblersAndSolver_valgrind.txt ==709479== ==709479== ==709479== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==709479== ==709479== ==709479== ==709479== HEAP SUMMARY: ==709479== in use at exit: 1,876,349 bytes in 11,748 blocks ==709479== total heap usage: 92,204 allocs, 80,456 frees, 1,539,691,303 bytes allocated ==709479== ==709479== LEAK SUMMARY: ==709479== definitely lost: 0 bytes in 0 blocks ==709479== indirectly lost: 0 bytes in 0 blocks ==709479== possibly lost: 0 bytes in 0 blocks ==709479== still reachable: 24 bytes in 2 blocks ==709479== suppressed: 1,876,325 bytes in 11,746 blocks ==709479== Reachable blocks (those to which a pointer was found) are not shown. ==709479== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==709479== ==709479== For lists of detected and suppressed errors, rerun with: -s ==709479== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 54 from 52)