==692358== Memcheck, a memory error detector ==692358== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==692358== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==692358== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestMoreMechanics -malloc_debug -malloc_dump -memory_info ==692358== Parent PID: 691175 ==692358== ==692358== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==692358== This could cause spurious value errors to appear. ==692358== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==692358== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==692358== This could cause spurious value errors to appear. ==692358== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==692358== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==692358== This could cause spurious value errors to appear. ==692358== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==692358== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==692358== This could cause spurious value errors to appear. ==692358== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==692358== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==692358== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==692358== Warning: set address range perms: large range [0x13b1f000, 0x33b1e000) (noaccess) ==692358== ==692358== FILE DESCRIPTORS: 14 open (3 std) at exit. ==692358== Open file descriptor 23: /dev/nvidia0 ==692358== at 0x86657A4: open (open64.c:41) ==692358== by 0x12BCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692358== by 0x12BCD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692358== by 0x12C66B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692358== by 0x12B54026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692358== by 0x12B5D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692358== by 0x12BD5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692358== by 0x12C5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692358== by 0x12A1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692358== by 0x129648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692358== by 0xBA4D023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692358== by 0xBA4DFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692358== by 0x106E146A: ??? ==692358== by 0xC5F9F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692358== by 0xC5D5B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692358== by 0xC586CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==692358== by 0xC4B3EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692358== by 0x106CFF03: ??? ==692358== by 0xC4E84CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692358== by 0x8CCC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692358== by 0x8C65D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692358== by 0x6C23D38: PetscInitialize (pinit.c:924) ==692358== by 0x6AFA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==692358== by 0x6AFA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==692358== by 0x13D80A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==692358== by 0x1385DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==692358== by 0x13B324: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==692358== by 0x13B1C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==692358== by 0x13B85B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==692358== by 0x135775: main (TestMoreMechanics.cpp:19) ==692358== ==692358== Open file descriptor 22: /dev/nvidia0 ==692358== at 0x86657A4: open (open64.c:41) ==692358== by 0x12BCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692358== by 0x12BCD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692358== by 0x12B5407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692358== by 0x12B5D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692358== by 0x12BD5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692358== by 0x12C5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692358== by 0x12A1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692358== by 0x129648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692358== by 0xBA4D023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692358== by 0xBA4DFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692358== by 0x106E146A: ??? ==692358== by 0xC5F9F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692358== by 0xC5D5B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692358== by 0xC586CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==692358== by 0xC4B3EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692358== by 0x106CFF03: ??? ==692358== by 0xC4E84CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692358== by 0x8CCC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692358== by 0x8C65D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692358== by 0x6C23D38: PetscInitialize (pinit.c:924) ==692358== by 0x6AFA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==692358== by 0x6AFA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==692358== by 0x13D80A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==692358== by 0x1385DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==692358== by 0x13B324: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==692358== by 0x13B1C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==692358== by 0x13B85B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==692358== by 0x135775: main (TestMoreMechanics.cpp:19) ==692358== ==692358== Open file descriptor 21: /dev/nvidia0 ==692358== at 0x86657A4: open (open64.c:41) ==692358== by 0x12BCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692358== by 0x12BCC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692358== by 0x12B5DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692358== by 0x12BD54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692358== by 0x12C5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692358== by 0x12A1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692358== by 0x129648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692358== by 0xBA4D023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692358== by 0xBA4DFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692358== by 0x106E146A: ??? ==692358== by 0xC5F9F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692358== by 0xC5D5B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692358== by 0xC586CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==692358== by 0xC4B3EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692358== by 0x106CFF03: ??? ==692358== by 0xC4E84CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692358== by 0x8CCC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692358== by 0x8C65D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692358== by 0x6C23D38: PetscInitialize (pinit.c:924) ==692358== by 0x6AFA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==692358== by 0x6AFA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==692358== by 0x13D80A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==692358== by 0x1385DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==692358== by 0x13B324: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==692358== by 0x13B1C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==692358== by 0x13B85B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==692358== by 0x135775: main (TestMoreMechanics.cpp:19) ==692358== ==692358== Open file descriptor 20: /dev/nvidia-uvm ==692358== at 0x86657A4: open (open64.c:41) ==692358== by 0x12A36F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692358== by 0x12A1A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692358== by 0x129648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692358== by 0xBA4D023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692358== by 0xBA4DFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692358== by 0x106E146A: ??? ==692358== by 0xC5F9F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692358== by 0xC5D5B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692358== by 0xC586CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==692358== by 0xC4B3EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692358== by 0x106CFF03: ??? ==692358== by 0xC4E84CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692358== by 0x8CCC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692358== by 0x8C65D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692358== by 0x6C23D38: PetscInitialize (pinit.c:924) ==692358== by 0x6AFA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==692358== by 0x6AFA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==692358== by 0x13D80A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==692358== by 0x1385DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==692358== by 0x13B324: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==692358== by 0x13B1C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==692358== by 0x13B85B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==692358== by 0x135775: main (TestMoreMechanics.cpp:19) ==692358== ==692358== Open file descriptor 19: /dev/nvidiactl ==692358== at 0x86657A4: open (open64.c:41) ==692358== by 0x12BCB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692358== by 0x12BD08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692358== by 0x12A1A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692358== by 0x129648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692358== by 0xBA4D023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692358== by 0xBA4DFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692358== by 0x106E146A: ??? ==692358== by 0xC5F9F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692358== by 0xC5D5B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692358== by 0xC586CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==692358== by 0xC4B3EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692358== by 0x106CFF03: ??? ==692358== by 0xC4E84CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692358== by 0x8CCC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692358== by 0x8C65D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692358== by 0x6C23D38: PetscInitialize (pinit.c:924) ==692358== by 0x6AFA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==692358== by 0x6AFA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==692358== by 0x13D80A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==692358== by 0x1385DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==692358== by 0x13B324: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==692358== by 0x13B1C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==692358== by 0x13B85B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==692358== by 0x135775: main (TestMoreMechanics.cpp:19) ==692358== ==692358== Open file descriptor 12: ==692358== at 0x866626D: pipe (pipe.c:29) ==692358== by 0x106CF07D: ??? ==692358== by 0xC4E84CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692358== by 0x8CCC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692358== by 0x8C65D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692358== by 0x6C23D38: PetscInitialize (pinit.c:924) ==692358== by 0x6AFA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==692358== by 0x6AFA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==692358== by 0x13D80A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==692358== by 0x1385DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==692358== by 0x13B324: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==692358== by 0x13B1C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==692358== by 0x13B85B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==692358== by 0x135775: main (TestMoreMechanics.cpp:19) ==692358== ==692358== Open file descriptor 8: /dev/shm/open_mpi.0000 ==692358== at 0x866AC0C: __open_nocancel (open64_nocancel.c:39) ==692358== by 0x85EEBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==692358== by 0x7EAD822: ??? ==692358== by 0x7EAD96F: ??? ==692358== by 0xC58D6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==692358== by 0xC58D938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==692358== by 0xC543922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==692358== by 0xC4E82DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692358== by 0x8CCC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692358== by 0x8C65D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692358== by 0x6C23D38: PetscInitialize (pinit.c:924) ==692358== by 0x6AFA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==692358== by 0x6AFA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==692358== by 0x13D80A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==692358== by 0x1385DD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==692358== by 0x13B324: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==692358== by 0x13B1C4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==692358== by 0x13B85B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==692358== by 0x135775: main (TestMoreMechanics.cpp:19) ==692358== ==692358== Open file descriptor 116: ==692358== ==692358== ==692358== Open file descriptor 113: ==692358== ==692358== ==692358== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMoreMechanics_valgrind.txt ==692358== ==692358== ==692358== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==692358== ==692358== ==692358== ==692358== HEAP SUMMARY: ==692358== in use at exit: 1,875,689 bytes in 11,734 blocks ==692358== total heap usage: 384,910 allocs, 373,176 frees, 1,634,770,655 bytes allocated ==692358== ==692358== LEAK SUMMARY: ==692358== definitely lost: 0 bytes in 0 blocks ==692358== indirectly lost: 0 bytes in 0 blocks ==692358== possibly lost: 0 bytes in 0 blocks ==692358== still reachable: 24 bytes in 2 blocks ==692358== suppressed: 1,875,665 bytes in 11,732 blocks ==692358== Reachable blocks (those to which a pointer was found) are not shown. ==692358== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==692358== ==692358== For lists of detected and suppressed errors, rerun with: -s ==692358== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 49 from 49)