==693012== Memcheck, a memory error detector ==693012== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==693012== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==693012== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNodeBasedCellPopulationWithParticles -malloc_debug -malloc_dump -memory_info ==693012== Parent PID: 691175 ==693012== ==693012== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==693012== This could cause spurious value errors to appear. ==693012== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==693012== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==693012== This could cause spurious value errors to appear. ==693012== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==693012== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==693012== This could cause spurious value errors to appear. ==693012== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==693012== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==693012== This could cause spurious value errors to appear. ==693012== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==693012== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==693012== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==693012== Warning: set address range perms: large range [0x1cb1f000, 0x3cb1e000) (noaccess) ==693012== ==693012== FILE DESCRIPTORS: 14 open (3 std) at exit. ==693012== Open file descriptor 23: /dev/nvidia0 ==693012== at 0xF9237A4: open (open64.c:41) ==693012== by 0x1BBCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==693012== by 0x1BBCD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==693012== by 0x1BC66B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==693012== by 0x1BB54026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==693012== by 0x1BB5D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==693012== by 0x1BBD5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==693012== by 0x1BC5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==693012== by 0x1BA1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==693012== by 0x1B9648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==693012== by 0x14771023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==693012== by 0x14771FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==693012== by 0x196B846A: ??? ==693012== by 0x14DC4F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==693012== by 0x14DA0B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==693012== by 0x14D51CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==693012== by 0x14C7EEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==693012== by 0x196A6F03: ??? ==693012== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==693012== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==693012== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==693012== by 0x10210D38: PetscInitialize (pinit.c:924) ==693012== by 0xF0F42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==693012== by 0xF0F432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==693012== by 0x2E2C1E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==693012== by 0x2D9419: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==693012== by 0x2DDDE4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==693012== by 0x2DDC84: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==693012== by 0x2DE31B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==693012== by 0x2D7835: main (TestNodeBasedCellPopulationWithParticles.cpp:19) ==693012== ==693012== Open file descriptor 22: /dev/nvidia0 ==693012== at 0xF9237A4: open (open64.c:41) ==693012== by 0x1BBCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==693012== by 0x1BBCD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==693012== by 0x1BB5407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==693012== by 0x1BB5D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==693012== by 0x1BBD5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==693012== by 0x1BC5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==693012== by 0x1BA1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==693012== by 0x1B9648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==693012== by 0x14771023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==693012== by 0x14771FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==693012== by 0x196B846A: ??? ==693012== by 0x14DC4F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==693012== by 0x14DA0B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==693012== by 0x14D51CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==693012== by 0x14C7EEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==693012== by 0x196A6F03: ??? ==693012== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==693012== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==693012== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==693012== by 0x10210D38: PetscInitialize (pinit.c:924) ==693012== by 0xF0F42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==693012== by 0xF0F432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==693012== by 0x2E2C1E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==693012== by 0x2D9419: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==693012== by 0x2DDDE4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==693012== by 0x2DDC84: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==693012== by 0x2DE31B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==693012== by 0x2D7835: main (TestNodeBasedCellPopulationWithParticles.cpp:19) ==693012== ==693012== Open file descriptor 21: /dev/nvidia0 ==693012== at 0xF9237A4: open (open64.c:41) ==693012== by 0x1BBCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==693012== by 0x1BBCC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==693012== by 0x1BB5DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==693012== by 0x1BBD54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==693012== by 0x1BC5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==693012== by 0x1BA1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==693012== by 0x1B9648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==693012== by 0x14771023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==693012== by 0x14771FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==693012== by 0x196B846A: ??? ==693012== by 0x14DC4F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==693012== by 0x14DA0B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==693012== by 0x14D51CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==693012== by 0x14C7EEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==693012== by 0x196A6F03: ??? ==693012== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==693012== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==693012== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==693012== by 0x10210D38: PetscInitialize (pinit.c:924) ==693012== by 0xF0F42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==693012== by 0xF0F432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==693012== by 0x2E2C1E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==693012== by 0x2D9419: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==693012== by 0x2DDDE4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==693012== by 0x2DDC84: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==693012== by 0x2DE31B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==693012== by 0x2D7835: main (TestNodeBasedCellPopulationWithParticles.cpp:19) ==693012== ==693012== Open file descriptor 20: /dev/nvidia-uvm ==693012== at 0xF9237A4: open (open64.c:41) ==693012== by 0x1BA36F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==693012== by 0x1BA1A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==693012== by 0x1B9648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==693012== by 0x14771023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==693012== by 0x14771FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==693012== by 0x196B846A: ??? ==693012== by 0x14DC4F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==693012== by 0x14DA0B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==693012== by 0x14D51CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==693012== by 0x14C7EEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==693012== by 0x196A6F03: ??? ==693012== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==693012== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==693012== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==693012== by 0x10210D38: PetscInitialize (pinit.c:924) ==693012== by 0xF0F42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==693012== by 0xF0F432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==693012== by 0x2E2C1E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==693012== by 0x2D9419: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==693012== by 0x2DDDE4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==693012== by 0x2DDC84: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==693012== by 0x2DE31B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==693012== by 0x2D7835: main (TestNodeBasedCellPopulationWithParticles.cpp:19) ==693012== ==693012== Open file descriptor 19: /dev/nvidiactl ==693012== at 0xF9237A4: open (open64.c:41) ==693012== by 0x1BBCB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==693012== by 0x1BBD08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==693012== by 0x1BA1A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==693012== by 0x1B9648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==693012== by 0x14771023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==693012== by 0x14771FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==693012== by 0x196B846A: ??? ==693012== by 0x14DC4F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==693012== by 0x14DA0B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==693012== by 0x14D51CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==693012== by 0x14C7EEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==693012== by 0x196A6F03: ??? ==693012== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==693012== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==693012== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==693012== by 0x10210D38: PetscInitialize (pinit.c:924) ==693012== by 0xF0F42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==693012== by 0xF0F432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==693012== by 0x2E2C1E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==693012== by 0x2D9419: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==693012== by 0x2DDDE4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==693012== by 0x2DDC84: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==693012== by 0x2DE31B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==693012== by 0x2D7835: main (TestNodeBasedCellPopulationWithParticles.cpp:19) ==693012== ==693012== Open file descriptor 12: ==693012== at 0xF92426D: pipe (pipe.c:29) ==693012== by 0x196A607D: ??? ==693012== by 0x14CB34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==693012== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==693012== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==693012== by 0x10210D38: PetscInitialize (pinit.c:924) ==693012== by 0xF0F42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==693012== by 0xF0F432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==693012== by 0x2E2C1E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==693012== by 0x2D9419: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==693012== by 0x2DDDE4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==693012== by 0x2DDC84: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==693012== by 0x2DE31B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==693012== by 0x2D7835: main (TestNodeBasedCellPopulationWithParticles.cpp:19) ==693012== ==693012== Open file descriptor 8: /dev/shm/open_mpi.0000 ==693012== at 0xF928C0C: __open_nocancel (open64_nocancel.c:39) ==693012== by 0xF8ACBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==693012== by 0xF129822: ??? ==693012== by 0xF12996F: ??? ==693012== by 0x14D586DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==693012== by 0x14D58938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==693012== by 0x14D0E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==693012== by 0x14CB32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==693012== by 0x11580418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==693012== by 0x11519D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==693012== by 0x10210D38: PetscInitialize (pinit.c:924) ==693012== by 0xF0F42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==693012== by 0xF0F432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==693012== by 0x2E2C1E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==693012== by 0x2D9419: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==693012== by 0x2DDDE4: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==693012== by 0x2DDC84: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==693012== by 0x2DE31B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==693012== by 0x2D7835: main (TestNodeBasedCellPopulationWithParticles.cpp:19) ==693012== ==693012== Open file descriptor 116: ==693012== ==693012== ==693012== Open file descriptor 113: ==693012== ==693012== ==693012== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNodeBasedCellPopulationWithParticles_valgrind.txt ==693012== ==693012== ==693012== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==693012== ==693012== ==693012== ==693012== HEAP SUMMARY: ==693012== in use at exit: 1,875,921 bytes in 11,739 blocks ==693012== total heap usage: 112,119 allocs, 100,380 frees, 1,540,839,119 bytes allocated ==693012== ==693012== LEAK SUMMARY: ==693012== definitely lost: 0 bytes in 0 blocks ==693012== indirectly lost: 0 bytes in 0 blocks ==693012== possibly lost: 0 bytes in 0 blocks ==693012== still reachable: 56 bytes in 3 blocks ==693012== suppressed: 1,875,865 bytes in 11,736 blocks ==693012== Reachable blocks (those to which a pointer was found) are not shown. ==693012== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==693012== ==693012== For lists of detected and suppressed errors, rerun with: -s ==693012== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 53 from 53)