==692371== Memcheck, a memory error detector ==692371== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==692371== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==692371== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestNonlinearElasticityTools -malloc_debug -malloc_dump -memory_info ==692371== Parent PID: 691175 ==692371== ==692371== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==692371== This could cause spurious value errors to appear. ==692371== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==692371== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==692371== This could cause spurious value errors to appear. ==692371== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==692371== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==692371== This could cause spurious value errors to appear. ==692371== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==692371== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==692371== This could cause spurious value errors to appear. ==692371== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==692371== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==692371== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==692371== Warning: set address range perms: large range [0x13b1f000, 0x33b1e000) (noaccess) ==692371== ==692371== FILE DESCRIPTORS: 14 open (3 std) at exit. ==692371== Open file descriptor 23: /dev/nvidia0 ==692371== at 0x6DD27A4: open (open64.c:41) ==692371== by 0x12BCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692371== by 0x12BCD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692371== by 0x12C66B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692371== by 0x12B54026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692371== by 0x12B5D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692371== by 0x12BD5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692371== by 0x12C5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692371== by 0x12A1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692371== by 0x129648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692371== by 0xBA9F023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692371== by 0xBA9FFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692371== by 0x106E246A: ??? ==692371== by 0xC0F0F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692371== by 0xC0CCB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692371== by 0xC07DCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==692371== by 0xBFAAEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692371== by 0x106D0F03: ??? ==692371== by 0xBFDF4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692371== by 0x88A4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692371== by 0x883DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692371== by 0x7409D38: PetscInitialize (pinit.c:924) ==692371== by 0x66CE2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==692371== by 0x66CE32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==692371== by 0x11AF6E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==692371== by 0x11656D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==692371== by 0x118EE8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==692371== by 0x118D88: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==692371== by 0x11941F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==692371== by 0x114995: main (TestNonlinearElasticityTools.cpp:19) ==692371== ==692371== Open file descriptor 22: /dev/nvidia0 ==692371== at 0x6DD27A4: open (open64.c:41) ==692371== by 0x12BCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692371== by 0x12BCD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692371== by 0x12B5407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692371== by 0x12B5D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692371== by 0x12BD5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692371== by 0x12C5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692371== by 0x12A1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692371== by 0x129648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692371== by 0xBA9F023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692371== by 0xBA9FFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692371== by 0x106E246A: ??? ==692371== by 0xC0F0F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692371== by 0xC0CCB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692371== by 0xC07DCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==692371== by 0xBFAAEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692371== by 0x106D0F03: ??? ==692371== by 0xBFDF4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692371== by 0x88A4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692371== by 0x883DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692371== by 0x7409D38: PetscInitialize (pinit.c:924) ==692371== by 0x66CE2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==692371== by 0x66CE32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==692371== by 0x11AF6E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==692371== by 0x11656D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==692371== by 0x118EE8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==692371== by 0x118D88: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==692371== by 0x11941F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==692371== by 0x114995: main (TestNonlinearElasticityTools.cpp:19) ==692371== ==692371== Open file descriptor 21: /dev/nvidia0 ==692371== at 0x6DD27A4: open (open64.c:41) ==692371== by 0x12BCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692371== by 0x12BCC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692371== by 0x12B5DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692371== by 0x12BD54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692371== by 0x12C5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692371== by 0x12A1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692371== by 0x129648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692371== by 0xBA9F023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692371== by 0xBA9FFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692371== by 0x106E246A: ??? ==692371== by 0xC0F0F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692371== by 0xC0CCB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692371== by 0xC07DCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==692371== by 0xBFAAEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692371== by 0x106D0F03: ??? ==692371== by 0xBFDF4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692371== by 0x88A4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692371== by 0x883DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692371== by 0x7409D38: PetscInitialize (pinit.c:924) ==692371== by 0x66CE2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==692371== by 0x66CE32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==692371== by 0x11AF6E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==692371== by 0x11656D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==692371== by 0x118EE8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==692371== by 0x118D88: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==692371== by 0x11941F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==692371== by 0x114995: main (TestNonlinearElasticityTools.cpp:19) ==692371== ==692371== Open file descriptor 20: /dev/nvidia-uvm ==692371== at 0x6DD27A4: open (open64.c:41) ==692371== by 0x12A36F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692371== by 0x12A1A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692371== by 0x129648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692371== by 0xBA9F023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692371== by 0xBA9FFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692371== by 0x106E246A: ??? ==692371== by 0xC0F0F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692371== by 0xC0CCB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692371== by 0xC07DCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==692371== by 0xBFAAEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692371== by 0x106D0F03: ??? ==692371== by 0xBFDF4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692371== by 0x88A4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692371== by 0x883DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692371== by 0x7409D38: PetscInitialize (pinit.c:924) ==692371== by 0x66CE2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==692371== by 0x66CE32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==692371== by 0x11AF6E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==692371== by 0x11656D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==692371== by 0x118EE8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==692371== by 0x118D88: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==692371== by 0x11941F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==692371== by 0x114995: main (TestNonlinearElasticityTools.cpp:19) ==692371== ==692371== Open file descriptor 19: /dev/nvidiactl ==692371== at 0x6DD27A4: open (open64.c:41) ==692371== by 0x12BCB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692371== by 0x12BD08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692371== by 0x12A1A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692371== by 0x129648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692371== by 0xBA9F023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692371== by 0xBA9FFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692371== by 0x106E246A: ??? ==692371== by 0xC0F0F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692371== by 0xC0CCB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692371== by 0xC07DCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==692371== by 0xBFAAEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692371== by 0x106D0F03: ??? ==692371== by 0xBFDF4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692371== by 0x88A4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692371== by 0x883DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692371== by 0x7409D38: PetscInitialize (pinit.c:924) ==692371== by 0x66CE2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==692371== by 0x66CE32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==692371== by 0x11AF6E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==692371== by 0x11656D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==692371== by 0x118EE8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==692371== by 0x118D88: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==692371== by 0x11941F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==692371== by 0x114995: main (TestNonlinearElasticityTools.cpp:19) ==692371== ==692371== Open file descriptor 12: ==692371== at 0x6DD326D: pipe (pipe.c:29) ==692371== by 0x106D007D: ??? ==692371== by 0xBFDF4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692371== by 0x88A4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692371== by 0x883DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692371== by 0x7409D38: PetscInitialize (pinit.c:924) ==692371== by 0x66CE2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==692371== by 0x66CE32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==692371== by 0x11AF6E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==692371== by 0x11656D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==692371== by 0x118EE8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==692371== by 0x118D88: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==692371== by 0x11941F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==692371== by 0x114995: main (TestNonlinearElasticityTools.cpp:19) ==692371== ==692371== Open file descriptor 8: /dev/shm/open_mpi.0000 ==692371== at 0x6DD7C0C: __open_nocancel (open64_nocancel.c:39) ==692371== by 0x6D5BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==692371== by 0x6703822: ??? ==692371== by 0x670396F: ??? ==692371== by 0xC0846DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==692371== by 0xC084938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==692371== by 0xC03A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==692371== by 0xBFDF2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692371== by 0x88A4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692371== by 0x883DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692371== by 0x7409D38: PetscInitialize (pinit.c:924) ==692371== by 0x66CE2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==692371== by 0x66CE32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==692371== by 0x11AF6E: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==692371== by 0x11656D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==692371== by 0x118EE8: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==692371== by 0x118D88: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==692371== by 0x11941F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==692371== by 0x114995: main (TestNonlinearElasticityTools.cpp:19) ==692371== ==692371== Open file descriptor 116: ==692371== ==692371== ==692371== Open file descriptor 113: ==692371== ==692371== ==692371== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestNonlinearElasticityTools_valgrind.txt ==692371== ==692371== ==692371== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==692371== ==692371== ==692371== ==692371== HEAP SUMMARY: ==692371== in use at exit: 1,875,790 bytes in 11,738 blocks ==692371== total heap usage: 66,296 allocs, 54,558 frees, 1,534,093,804 bytes allocated ==692371== ==692371== LEAK SUMMARY: ==692371== definitely lost: 0 bytes in 0 blocks ==692371== indirectly lost: 0 bytes in 0 blocks ==692371== possibly lost: 0 bytes in 0 blocks ==692371== still reachable: 24 bytes in 2 blocks ==692371== suppressed: 1,875,766 bytes in 11,736 blocks ==692371== Reachable blocks (those to which a pointer was found) are not shown. ==692371== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==692371== ==692371== For lists of detected and suppressed errors, rerun with: -s ==692371== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 51 from 51)