==691373== Memcheck, a memory error detector ==691373== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==691373== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==691373== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestPetscTools -malloc_debug -malloc_dump -memory_info ==691373== Parent PID: 691175 ==691373== ==691373== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==691373== This could cause spurious value errors to appear. ==691373== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==691373== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==691373== This could cause spurious value errors to appear. ==691373== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==691373== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==691373== This could cause spurious value errors to appear. ==691373== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==691373== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==691373== This could cause spurious value errors to appear. ==691373== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==691373== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==691373== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==691373== Warning: set address range perms: large range [0x1011f000, 0x3011e000) (noaccess) ==691373== ==691373== FILE DESCRIPTORS: 14 open (3 std) at exit. ==691373== Open file descriptor 23: /dev/nvidia0 ==691373== at 0x61707A4: open (open64.c:41) ==691373== by 0xF1CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691373== by 0xF1CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691373== by 0xF266B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691373== by 0xF154026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691373== by 0xF15D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691373== by 0xF1D5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691373== by 0xF25FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691373== by 0xF01A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691373== by 0xEF648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691373== by 0x8481023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==691373== by 0x8481FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==691373== by 0xAEB746A: ??? ==691373== by 0x8AD4F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==691373== by 0x8AB0B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==691373== by 0x8A61CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==691373== by 0x898EEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==691373== by 0xAEA5F03: ??? ==691373== by 0x89C34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==691373== by 0x5DBE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==691373== by 0x5D57D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==691373== by 0x4A23D38: PetscInitialize (pinit.c:924) ==691373== by 0x48FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==691373== by 0x48FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==691373== by 0x117904: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==691373== by 0x112B8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==691373== by 0x1157E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==691373== by 0x115682: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==691373== by 0x115D19: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==691373== by 0x110FB5: main (TestPetscTools.cpp:19) ==691373== ==691373== Open file descriptor 22: /dev/nvidia0 ==691373== at 0x61707A4: open (open64.c:41) ==691373== by 0xF1CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691373== by 0xF1CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691373== by 0xF15407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691373== by 0xF15D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691373== by 0xF1D5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691373== by 0xF25FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691373== by 0xF01A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691373== by 0xEF648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691373== by 0x8481023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==691373== by 0x8481FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==691373== by 0xAEB746A: ??? ==691373== by 0x8AD4F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==691373== by 0x8AB0B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==691373== by 0x8A61CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==691373== by 0x898EEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==691373== by 0xAEA5F03: ??? ==691373== by 0x89C34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==691373== by 0x5DBE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==691373== by 0x5D57D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==691373== by 0x4A23D38: PetscInitialize (pinit.c:924) ==691373== by 0x48FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==691373== by 0x48FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==691373== by 0x117904: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==691373== by 0x112B8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==691373== by 0x1157E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==691373== by 0x115682: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==691373== by 0x115D19: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==691373== by 0x110FB5: main (TestPetscTools.cpp:19) ==691373== ==691373== Open file descriptor 21: /dev/nvidia0 ==691373== at 0x61707A4: open (open64.c:41) ==691373== by 0xF1CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691373== by 0xF1CC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691373== by 0xF15DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691373== by 0xF1D54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691373== by 0xF25FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691373== by 0xF01A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691373== by 0xEF648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691373== by 0x8481023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==691373== by 0x8481FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==691373== by 0xAEB746A: ??? ==691373== by 0x8AD4F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==691373== by 0x8AB0B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==691373== by 0x8A61CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==691373== by 0x898EEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==691373== by 0xAEA5F03: ??? ==691373== by 0x89C34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==691373== by 0x5DBE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==691373== by 0x5D57D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==691373== by 0x4A23D38: PetscInitialize (pinit.c:924) ==691373== by 0x48FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==691373== by 0x48FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==691373== by 0x117904: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==691373== by 0x112B8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==691373== by 0x1157E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==691373== by 0x115682: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==691373== by 0x115D19: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==691373== by 0x110FB5: main (TestPetscTools.cpp:19) ==691373== ==691373== Open file descriptor 20: /dev/nvidia-uvm ==691373== at 0x61707A4: open (open64.c:41) ==691373== by 0xF036F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691373== by 0xF01A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691373== by 0xEF648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691373== by 0x8481023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==691373== by 0x8481FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==691373== by 0xAEB746A: ??? ==691373== by 0x8AD4F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==691373== by 0x8AB0B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==691373== by 0x8A61CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==691373== by 0x898EEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==691373== by 0xAEA5F03: ??? ==691373== by 0x89C34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==691373== by 0x5DBE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==691373== by 0x5D57D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==691373== by 0x4A23D38: PetscInitialize (pinit.c:924) ==691373== by 0x48FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==691373== by 0x48FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==691373== by 0x117904: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==691373== by 0x112B8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==691373== by 0x1157E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==691373== by 0x115682: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==691373== by 0x115D19: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==691373== by 0x110FB5: main (TestPetscTools.cpp:19) ==691373== ==691373== Open file descriptor 19: /dev/nvidiactl ==691373== at 0x61707A4: open (open64.c:41) ==691373== by 0xF1CB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691373== by 0xF1D08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691373== by 0xF01A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691373== by 0xEF648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691373== by 0x8481023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==691373== by 0x8481FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==691373== by 0xAEB746A: ??? ==691373== by 0x8AD4F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==691373== by 0x8AB0B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==691373== by 0x8A61CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==691373== by 0x898EEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==691373== by 0xAEA5F03: ??? ==691373== by 0x89C34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==691373== by 0x5DBE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==691373== by 0x5D57D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==691373== by 0x4A23D38: PetscInitialize (pinit.c:924) ==691373== by 0x48FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==691373== by 0x48FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==691373== by 0x117904: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==691373== by 0x112B8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==691373== by 0x1157E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==691373== by 0x115682: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==691373== by 0x115D19: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==691373== by 0x110FB5: main (TestPetscTools.cpp:19) ==691373== ==691373== Open file descriptor 12: ==691373== at 0x617126D: pipe (pipe.c:29) ==691373== by 0xAEA507D: ??? ==691373== by 0x89C34CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==691373== by 0x5DBE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==691373== by 0x5D57D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==691373== by 0x4A23D38: PetscInitialize (pinit.c:924) ==691373== by 0x48FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==691373== by 0x48FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==691373== by 0x117904: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==691373== by 0x112B8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==691373== by 0x1157E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==691373== by 0x115682: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==691373== by 0x115D19: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==691373== by 0x110FB5: main (TestPetscTools.cpp:19) ==691373== ==691373== Open file descriptor 8: /dev/shm/open_mpi.0000 ==691373== at 0x6175C0C: __open_nocancel (open64_nocancel.c:39) ==691373== by 0x60F9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==691373== by 0x5CAD822: ??? ==691373== by 0x5CAD96F: ??? ==691373== by 0x8A686DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==691373== by 0x8A68938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==691373== by 0x8A1E922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==691373== by 0x89C32DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==691373== by 0x5DBE418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==691373== by 0x5D57D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==691373== by 0x4A23D38: PetscInitialize (pinit.c:924) ==691373== by 0x48FA2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==691373== by 0x48FA32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==691373== by 0x117904: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==691373== by 0x112B8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==691373== by 0x1157E2: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==691373== by 0x115682: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==691373== by 0x115D19: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==691373== by 0x110FB5: main (TestPetscTools.cpp:19) ==691373== ==691373== Open file descriptor 116: ==691373== ==691373== ==691373== Open file descriptor 113: ==691373== ==691373== ==691373== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestPetscTools_valgrind.txt ==691373== ==691373== ==691373== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==691373== ==691373== ==691373== ==691373== HEAP SUMMARY: ==691373== in use at exit: 1,875,299 bytes in 11,738 blocks ==691373== total heap usage: 56,439 allocs, 44,701 frees, 1,533,493,676 bytes allocated ==691373== ==691373== LEAK SUMMARY: ==691373== definitely lost: 0 bytes in 0 blocks ==691373== indirectly lost: 0 bytes in 0 blocks ==691373== possibly lost: 0 bytes in 0 blocks ==691373== still reachable: 24 bytes in 2 blocks ==691373== suppressed: 1,875,275 bytes in 11,736 blocks ==691373== Reachable blocks (those to which a pointer was found) are not shown. ==691373== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==691373== ==691373== For lists of detected and suppressed errors, rerun with: -s ==691373== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 53 from 53)