==692372== Memcheck, a memory error detector ==692372== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==692372== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==692372== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestProblemDefinitions -malloc_debug -malloc_dump -memory_info ==692372== Parent PID: 691175 ==692372== ==692372== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==692372== This could cause spurious value errors to appear. ==692372== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==692372== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==692372== This could cause spurious value errors to appear. ==692372== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==692372== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==692372== This could cause spurious value errors to appear. ==692372== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==692372== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==692372== This could cause spurious value errors to appear. ==692372== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==692372== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==692372== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==692372== Warning: set address range perms: large range [0x13b1f000, 0x33b1e000) (noaccess) ==692372== ==692372== FILE DESCRIPTORS: 14 open (3 std) at exit. ==692372== Open file descriptor 23: /dev/nvidia0 ==692372== at 0x6EB97A4: open (open64.c:41) ==692372== by 0x12BCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692372== by 0x12BCD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692372== by 0x12C66B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692372== by 0x12B54026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692372== by 0x12B5D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692372== by 0x12BD5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692372== by 0x12C5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692372== by 0x12A1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692372== by 0x129648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692372== by 0xBA9F023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692372== by 0xBA9FFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692372== by 0x106E246A: ??? ==692372== by 0xC0F0F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692372== by 0xC0CCB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692372== by 0xC07DCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==692372== by 0xBFAAEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692372== by 0x106D0F03: ??? ==692372== by 0xBFDF4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692372== by 0x88A4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692372== by 0x883DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692372== by 0x74F0D38: PetscInitialize (pinit.c:924) ==692372== by 0x66CE2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==692372== by 0x66CE32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==692372== by 0x12BCDE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==692372== by 0x126D2B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==692372== by 0x12992C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==692372== by 0x1297CC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==692372== by 0x129E63: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==692372== by 0x124F95: main (TestProblemDefinitions.cpp:19) ==692372== ==692372== Open file descriptor 22: /dev/nvidia0 ==692372== at 0x6EB97A4: open (open64.c:41) ==692372== by 0x12BCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692372== by 0x12BCD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692372== by 0x12B5407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692372== by 0x12B5D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692372== by 0x12BD5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692372== by 0x12C5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692372== by 0x12A1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692372== by 0x129648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692372== by 0xBA9F023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692372== by 0xBA9FFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692372== by 0x106E246A: ??? ==692372== by 0xC0F0F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692372== by 0xC0CCB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692372== by 0xC07DCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==692372== by 0xBFAAEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692372== by 0x106D0F03: ??? ==692372== by 0xBFDF4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692372== by 0x88A4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692372== by 0x883DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692372== by 0x74F0D38: PetscInitialize (pinit.c:924) ==692372== by 0x66CE2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==692372== by 0x66CE32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==692372== by 0x12BCDE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==692372== by 0x126D2B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==692372== by 0x12992C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==692372== by 0x1297CC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==692372== by 0x129E63: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==692372== by 0x124F95: main (TestProblemDefinitions.cpp:19) ==692372== ==692372== Open file descriptor 21: /dev/nvidia0 ==692372== at 0x6EB97A4: open (open64.c:41) ==692372== by 0x12BCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692372== by 0x12BCC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692372== by 0x12B5DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692372== by 0x12BD54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692372== by 0x12C5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692372== by 0x12A1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692372== by 0x129648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692372== by 0xBA9F023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692372== by 0xBA9FFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692372== by 0x106E246A: ??? ==692372== by 0xC0F0F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692372== by 0xC0CCB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692372== by 0xC07DCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==692372== by 0xBFAAEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692372== by 0x106D0F03: ??? ==692372== by 0xBFDF4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692372== by 0x88A4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692372== by 0x883DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692372== by 0x74F0D38: PetscInitialize (pinit.c:924) ==692372== by 0x66CE2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==692372== by 0x66CE32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==692372== by 0x12BCDE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==692372== by 0x126D2B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==692372== by 0x12992C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==692372== by 0x1297CC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==692372== by 0x129E63: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==692372== by 0x124F95: main (TestProblemDefinitions.cpp:19) ==692372== ==692372== Open file descriptor 20: /dev/nvidia-uvm ==692372== at 0x6EB97A4: open (open64.c:41) ==692372== by 0x12A36F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692372== by 0x12A1A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692372== by 0x129648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692372== by 0xBA9F023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692372== by 0xBA9FFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692372== by 0x106E246A: ??? ==692372== by 0xC0F0F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692372== by 0xC0CCB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692372== by 0xC07DCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==692372== by 0xBFAAEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692372== by 0x106D0F03: ??? ==692372== by 0xBFDF4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692372== by 0x88A4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692372== by 0x883DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692372== by 0x74F0D38: PetscInitialize (pinit.c:924) ==692372== by 0x66CE2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==692372== by 0x66CE32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==692372== by 0x12BCDE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==692372== by 0x126D2B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==692372== by 0x12992C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==692372== by 0x1297CC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==692372== by 0x129E63: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==692372== by 0x124F95: main (TestProblemDefinitions.cpp:19) ==692372== ==692372== Open file descriptor 19: /dev/nvidiactl ==692372== at 0x6EB97A4: open (open64.c:41) ==692372== by 0x12BCB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692372== by 0x12BD08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692372== by 0x12A1A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692372== by 0x129648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692372== by 0xBA9F023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692372== by 0xBA9FFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692372== by 0x106E246A: ??? ==692372== by 0xC0F0F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692372== by 0xC0CCB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692372== by 0xC07DCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==692372== by 0xBFAAEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692372== by 0x106D0F03: ??? ==692372== by 0xBFDF4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692372== by 0x88A4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692372== by 0x883DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692372== by 0x74F0D38: PetscInitialize (pinit.c:924) ==692372== by 0x66CE2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==692372== by 0x66CE32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==692372== by 0x12BCDE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==692372== by 0x126D2B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==692372== by 0x12992C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==692372== by 0x1297CC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==692372== by 0x129E63: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==692372== by 0x124F95: main (TestProblemDefinitions.cpp:19) ==692372== ==692372== Open file descriptor 12: ==692372== at 0x6EBA26D: pipe (pipe.c:29) ==692372== by 0x106D007D: ??? ==692372== by 0xBFDF4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692372== by 0x88A4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692372== by 0x883DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692372== by 0x74F0D38: PetscInitialize (pinit.c:924) ==692372== by 0x66CE2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==692372== by 0x66CE32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==692372== by 0x12BCDE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==692372== by 0x126D2B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==692372== by 0x12992C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==692372== by 0x1297CC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==692372== by 0x129E63: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==692372== by 0x124F95: main (TestProblemDefinitions.cpp:19) ==692372== ==692372== Open file descriptor 8: /dev/shm/open_mpi.0000 ==692372== at 0x6EBEC0C: __open_nocancel (open64_nocancel.c:39) ==692372== by 0x6E42BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==692372== by 0x6703822: ??? ==692372== by 0x670396F: ??? ==692372== by 0xC0846DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==692372== by 0xC084938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==692372== by 0xC03A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==692372== by 0xBFDF2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692372== by 0x88A4418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692372== by 0x883DD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692372== by 0x74F0D38: PetscInitialize (pinit.c:924) ==692372== by 0x66CE2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==692372== by 0x66CE32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==692372== by 0x12BCDE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==692372== by 0x126D2B: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==692372== by 0x12992C: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==692372== by 0x1297CC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==692372== by 0x129E63: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==692372== by 0x124F95: main (TestProblemDefinitions.cpp:19) ==692372== ==692372== Open file descriptor 116: ==692372== ==692372== ==692372== Open file descriptor 113: ==692372== ==692372== ==692372== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestProblemDefinitions_valgrind.txt ==692372== ==692372== ==692372== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==692372== ==692372== ==692372== ==692372== HEAP SUMMARY: ==692372== in use at exit: 1,875,768 bytes in 11,738 blocks ==692372== total heap usage: 57,082 allocs, 45,344 frees, 1,533,131,973 bytes allocated ==692372== ==692372== LEAK SUMMARY: ==692372== definitely lost: 0 bytes in 0 blocks ==692372== indirectly lost: 0 bytes in 0 blocks ==692372== possibly lost: 0 bytes in 0 blocks ==692372== still reachable: 24 bytes in 2 blocks ==692372== suppressed: 1,875,744 bytes in 11,736 blocks ==692372== Reachable blocks (those to which a pointer was found) are not shown. ==692372== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==692372== ==692372== For lists of detected and suppressed errors, rerun with: -s ==692372== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 53 from 53)