==708814== Memcheck, a memory error detector ==708814== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==708814== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==708814== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestRushLarsen -malloc_debug -malloc_dump -memory_info ==708814== Parent PID: 691175 ==708814== ==708814== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==708814== This could cause spurious value errors to appear. ==708814== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==708814== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==708814== This could cause spurious value errors to appear. ==708814== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==708814== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==708814== This could cause spurious value errors to appear. ==708814== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==708814== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==708814== This could cause spurious value errors to appear. ==708814== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==708814== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==708814== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==708814== Warning: set address range perms: large range [0x1771f000, 0x3771e000) (noaccess) ==708814== ==708814== FILE DESCRIPTORS: 14 open (3 std) at exit. ==708814== Open file descriptor 23: /dev/nvidia0 ==708814== at 0x9C6F7A4: open (open64.c:41) ==708814== by 0x167CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708814== by 0x167CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708814== by 0x16866B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708814== by 0x16754026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708814== by 0x1675D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708814== by 0x167D5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708814== by 0x1685FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708814== by 0x1661A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708814== by 0x165648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708814== by 0xE8DD023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==708814== by 0xE8DDFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==708814== by 0x1433146A: ??? ==708814== by 0xEF32F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==708814== by 0xEF0EB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==708814== by 0xEEBFCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==708814== by 0xEDEAEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==708814== by 0x1431FF03: ??? ==708814== by 0xEE1F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==708814== by 0x98A3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==708814== by 0x983CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==708814== by 0x8508D38: PetscInitialize (pinit.c:924) ==708814== by 0x83DF2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==708814== by 0x83DF32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==708814== by 0x11AC45: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==708814== by 0x116433: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==708814== by 0x118934: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==708814== by 0x11882F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==708814== by 0x118E43: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==708814== by 0x114C35: main (TestRushLarsen.cpp:18) ==708814== ==708814== Open file descriptor 22: /dev/nvidia0 ==708814== at 0x9C6F7A4: open (open64.c:41) ==708814== by 0x167CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708814== by 0x167CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708814== by 0x1675407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708814== by 0x1675D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708814== by 0x167D5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708814== by 0x1685FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708814== by 0x1661A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708814== by 0x165648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708814== by 0xE8DD023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==708814== by 0xE8DDFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==708814== by 0x1433146A: ??? ==708814== by 0xEF32F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==708814== by 0xEF0EB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==708814== by 0xEEBFCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==708814== by 0xEDEAEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==708814== by 0x1431FF03: ??? ==708814== by 0xEE1F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==708814== by 0x98A3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==708814== by 0x983CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==708814== by 0x8508D38: PetscInitialize (pinit.c:924) ==708814== by 0x83DF2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==708814== by 0x83DF32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==708814== by 0x11AC45: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==708814== by 0x116433: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==708814== by 0x118934: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==708814== by 0x11882F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==708814== by 0x118E43: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==708814== by 0x114C35: main (TestRushLarsen.cpp:18) ==708814== ==708814== Open file descriptor 21: /dev/nvidia0 ==708814== at 0x9C6F7A4: open (open64.c:41) ==708814== by 0x167CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708814== by 0x167CC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708814== by 0x1675DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708814== by 0x167D54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708814== by 0x1685FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708814== by 0x1661A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708814== by 0x165648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708814== by 0xE8DD023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==708814== by 0xE8DDFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==708814== by 0x1433146A: ??? ==708814== by 0xEF32F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==708814== by 0xEF0EB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==708814== by 0xEEBFCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==708814== by 0xEDEAEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==708814== by 0x1431FF03: ??? ==708814== by 0xEE1F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==708814== by 0x98A3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==708814== by 0x983CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==708814== by 0x8508D38: PetscInitialize (pinit.c:924) ==708814== by 0x83DF2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==708814== by 0x83DF32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==708814== by 0x11AC45: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==708814== by 0x116433: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==708814== by 0x118934: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==708814== by 0x11882F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==708814== by 0x118E43: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==708814== by 0x114C35: main (TestRushLarsen.cpp:18) ==708814== ==708814== Open file descriptor 20: /dev/nvidia-uvm ==708814== at 0x9C6F7A4: open (open64.c:41) ==708814== by 0x16636F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708814== by 0x1661A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708814== by 0x165648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708814== by 0xE8DD023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==708814== by 0xE8DDFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==708814== by 0x1433146A: ??? ==708814== by 0xEF32F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==708814== by 0xEF0EB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==708814== by 0xEEBFCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==708814== by 0xEDEAEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==708814== by 0x1431FF03: ??? ==708814== by 0xEE1F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==708814== by 0x98A3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==708814== by 0x983CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==708814== by 0x8508D38: PetscInitialize (pinit.c:924) ==708814== by 0x83DF2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==708814== by 0x83DF32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==708814== by 0x11AC45: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==708814== by 0x116433: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==708814== by 0x118934: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==708814== by 0x11882F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==708814== by 0x118E43: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==708814== by 0x114C35: main (TestRushLarsen.cpp:18) ==708814== ==708814== Open file descriptor 19: /dev/nvidiactl ==708814== at 0x9C6F7A4: open (open64.c:41) ==708814== by 0x167CB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708814== by 0x167D08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708814== by 0x1661A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708814== by 0x165648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==708814== by 0xE8DD023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==708814== by 0xE8DDFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==708814== by 0x1433146A: ??? ==708814== by 0xEF32F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==708814== by 0xEF0EB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==708814== by 0xEEBFCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==708814== by 0xEDEAEF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==708814== by 0x1431FF03: ??? ==708814== by 0xEE1F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==708814== by 0x98A3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==708814== by 0x983CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==708814== by 0x8508D38: PetscInitialize (pinit.c:924) ==708814== by 0x83DF2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==708814== by 0x83DF32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==708814== by 0x11AC45: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==708814== by 0x116433: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==708814== by 0x118934: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==708814== by 0x11882F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==708814== by 0x118E43: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==708814== by 0x114C35: main (TestRushLarsen.cpp:18) ==708814== ==708814== Open file descriptor 12: ==708814== at 0x9C7026D: pipe (pipe.c:29) ==708814== by 0x1431F07D: ??? ==708814== by 0xEE1F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==708814== by 0x98A3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==708814== by 0x983CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==708814== by 0x8508D38: PetscInitialize (pinit.c:924) ==708814== by 0x83DF2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==708814== by 0x83DF32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==708814== by 0x11AC45: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==708814== by 0x116433: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==708814== by 0x118934: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==708814== by 0x11882F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==708814== by 0x118E43: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==708814== by 0x114C35: main (TestRushLarsen.cpp:18) ==708814== ==708814== Open file descriptor 8: /dev/shm/open_mpi.0000 ==708814== at 0x9C74C0C: __open_nocancel (open64_nocancel.c:39) ==708814== by 0x9BF8BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==708814== by 0x9792822: ??? ==708814== by 0x979296F: ??? ==708814== by 0xEEC66DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==708814== by 0xEEC6938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==708814== by 0xEE7C922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==708814== by 0xEE1F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==708814== by 0x98A3418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==708814== by 0x983CD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==708814== by 0x8508D38: PetscInitialize (pinit.c:924) ==708814== by 0x83DF2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==708814== by 0x83DF32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==708814== by 0x11AC45: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==708814== by 0x116433: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==708814== by 0x118934: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==708814== by 0x11882F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==708814== by 0x118E43: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==708814== by 0x114C35: main (TestRushLarsen.cpp:18) ==708814== ==708814== Open file descriptor 116: ==708814== ==708814== ==708814== Open file descriptor 113: ==708814== ==708814== ==708814== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestRushLarsen_valgrind.txt ==708814== ==708814== ==708814== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==708814== ==708814== ==708814== ==708814== HEAP SUMMARY: ==708814== in use at exit: 1,879,471 bytes in 11,742 blocks ==708814== total heap usage: 1,060,456 allocs, 1,048,714 frees, 1,973,512,213 bytes allocated ==708814== ==708814== LEAK SUMMARY: ==708814== definitely lost: 0 bytes in 0 blocks ==708814== indirectly lost: 0 bytes in 0 blocks ==708814== possibly lost: 0 bytes in 0 blocks ==708814== still reachable: 3,647 bytes in 10 blocks ==708814== suppressed: 1,875,824 bytes in 11,732 blocks ==708814== Reachable blocks (those to which a pointer was found) are not shown. ==708814== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==708814== ==708814== For lists of detected and suppressed errors, rerun with: -s ==708814== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 49 from 49)