==692586== Memcheck, a memory error detector ==692586== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==692586== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==692586== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestSimulationsWithEllipticBoxDomainPdeModifier -malloc_debug -malloc_dump -memory_info ==692586== Parent PID: 691175 ==692586== ==692586== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==692586== This could cause spurious value errors to appear. ==692586== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==692586== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==692586== This could cause spurious value errors to appear. ==692586== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==692586== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==692586== This could cause spurious value errors to appear. ==692586== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==692586== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==692586== This could cause spurious value errors to appear. ==692586== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==692586== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==692586== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==692586== Warning: set address range perms: large range [0x1cb1f000, 0x3cb1e000) (noaccess) ==692586== ==692586== FILE DESCRIPTORS: 14 open (3 std) at exit. ==692586== Open file descriptor 23: /dev/nvidia0 ==692586== at 0x1104C7A4: open (open64.c:41) ==692586== by 0x1BBCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692586== by 0x1BBCD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692586== by 0x1BC66B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692586== by 0x1BB54026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692586== by 0x1BB5D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692586== by 0x1BBD5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692586== by 0x1BC5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692586== by 0x1BA1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692586== by 0x1B9648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692586== by 0x146D6023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692586== by 0x146D6FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692586== by 0x196B746A: ??? ==692586== by 0x14D27F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692586== by 0x14D03B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692586== by 0x14CB4CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==692586== by 0x14BE1EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692586== by 0x196A5F03: ??? ==692586== by 0x14C164CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692586== by 0x10955418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692586== by 0x108EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692586== by 0xF5BAD38: PetscInitialize (pinit.c:924) ==692586== by 0xF4912DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==692586== by 0xF49132D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==692586== by 0x1294E1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==692586== by 0x1249D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==692586== by 0x126F4A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==692586== by 0x126E45: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==692586== by 0x127459: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==692586== by 0x1231D5: main (TestSimulationsWithEllipticBoxDomainPdeModifier.cpp:18) ==692586== ==692586== Open file descriptor 22: /dev/nvidia0 ==692586== at 0x1104C7A4: open (open64.c:41) ==692586== by 0x1BBCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692586== by 0x1BBCD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692586== by 0x1BB5407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692586== by 0x1BB5D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692586== by 0x1BBD5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692586== by 0x1BC5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692586== by 0x1BA1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692586== by 0x1B9648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692586== by 0x146D6023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692586== by 0x146D6FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692586== by 0x196B746A: ??? ==692586== by 0x14D27F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692586== by 0x14D03B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692586== by 0x14CB4CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==692586== by 0x14BE1EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692586== by 0x196A5F03: ??? ==692586== by 0x14C164CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692586== by 0x10955418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692586== by 0x108EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692586== by 0xF5BAD38: PetscInitialize (pinit.c:924) ==692586== by 0xF4912DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==692586== by 0xF49132D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==692586== by 0x1294E1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==692586== by 0x1249D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==692586== by 0x126F4A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==692586== by 0x126E45: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==692586== by 0x127459: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==692586== by 0x1231D5: main (TestSimulationsWithEllipticBoxDomainPdeModifier.cpp:18) ==692586== ==692586== Open file descriptor 21: /dev/nvidia0 ==692586== at 0x1104C7A4: open (open64.c:41) ==692586== by 0x1BBCB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692586== by 0x1BBCC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692586== by 0x1BB5DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692586== by 0x1BBD54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692586== by 0x1BC5FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692586== by 0x1BA1A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692586== by 0x1B9648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692586== by 0x146D6023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692586== by 0x146D6FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692586== by 0x196B746A: ??? ==692586== by 0x14D27F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692586== by 0x14D03B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692586== by 0x14CB4CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==692586== by 0x14BE1EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692586== by 0x196A5F03: ??? ==692586== by 0x14C164CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692586== by 0x10955418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692586== by 0x108EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692586== by 0xF5BAD38: PetscInitialize (pinit.c:924) ==692586== by 0xF4912DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==692586== by 0xF49132D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==692586== by 0x1294E1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==692586== by 0x1249D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==692586== by 0x126F4A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==692586== by 0x126E45: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==692586== by 0x127459: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==692586== by 0x1231D5: main (TestSimulationsWithEllipticBoxDomainPdeModifier.cpp:18) ==692586== ==692586== Open file descriptor 20: /dev/nvidia-uvm ==692586== at 0x1104C7A4: open (open64.c:41) ==692586== by 0x1BA36F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692586== by 0x1BA1A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692586== by 0x1B9648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692586== by 0x146D6023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692586== by 0x146D6FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692586== by 0x196B746A: ??? ==692586== by 0x14D27F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692586== by 0x14D03B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692586== by 0x14CB4CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==692586== by 0x14BE1EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692586== by 0x196A5F03: ??? ==692586== by 0x14C164CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692586== by 0x10955418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692586== by 0x108EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692586== by 0xF5BAD38: PetscInitialize (pinit.c:924) ==692586== by 0xF4912DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==692586== by 0xF49132D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==692586== by 0x1294E1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==692586== by 0x1249D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==692586== by 0x126F4A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==692586== by 0x126E45: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==692586== by 0x127459: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==692586== by 0x1231D5: main (TestSimulationsWithEllipticBoxDomainPdeModifier.cpp:18) ==692586== ==692586== Open file descriptor 19: /dev/nvidiactl ==692586== at 0x1104C7A4: open (open64.c:41) ==692586== by 0x1BBCB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692586== by 0x1BBD08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692586== by 0x1BA1A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692586== by 0x1B9648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==692586== by 0x146D6023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692586== by 0x146D6FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==692586== by 0x196B746A: ??? ==692586== by 0x14D27F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692586== by 0x14D03B30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==692586== by 0x14CB4CB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==692586== by 0x14BE1EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692586== by 0x196A5F03: ??? ==692586== by 0x14C164CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692586== by 0x10955418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692586== by 0x108EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692586== by 0xF5BAD38: PetscInitialize (pinit.c:924) ==692586== by 0xF4912DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==692586== by 0xF49132D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==692586== by 0x1294E1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==692586== by 0x1249D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==692586== by 0x126F4A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==692586== by 0x126E45: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==692586== by 0x127459: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==692586== by 0x1231D5: main (TestSimulationsWithEllipticBoxDomainPdeModifier.cpp:18) ==692586== ==692586== Open file descriptor 12: ==692586== at 0x1104D26D: pipe (pipe.c:29) ==692586== by 0x196A507D: ??? ==692586== by 0x14C164CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692586== by 0x10955418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692586== by 0x108EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692586== by 0xF5BAD38: PetscInitialize (pinit.c:924) ==692586== by 0xF4912DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==692586== by 0xF49132D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==692586== by 0x1294E1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==692586== by 0x1249D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==692586== by 0x126F4A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==692586== by 0x126E45: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==692586== by 0x127459: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==692586== by 0x1231D5: main (TestSimulationsWithEllipticBoxDomainPdeModifier.cpp:18) ==692586== ==692586== Open file descriptor 8: /dev/shm/open_mpi.0000 ==692586== at 0x11051C0C: __open_nocancel (open64_nocancel.c:39) ==692586== by 0x10FD5BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==692586== by 0x10844822: ??? ==692586== by 0x1084496F: ??? ==692586== by 0x14CBB6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==692586== by 0x14CBB938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==692586== by 0x14C71922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==692586== by 0x14C162DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==692586== by 0x10955418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692586== by 0x108EED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==692586== by 0xF5BAD38: PetscInitialize (pinit.c:924) ==692586== by 0xF4912DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==692586== by 0xF49132D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==692586== by 0x1294E1: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==692586== by 0x1249D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==692586== by 0x126F4A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==692586== by 0x126E45: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==692586== by 0x127459: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==692586== by 0x1231D5: main (TestSimulationsWithEllipticBoxDomainPdeModifier.cpp:18) ==692586== ==692586== Open file descriptor 116: ==692586== ==692586== ==692586== Open file descriptor 113: ==692586== ==692586== ==692586== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestSimulationsWithEllipticBoxDomainPdeModifier_valgrind.txt ==692586== ==692586== ==692586== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==692586== ==692586== ==692586== ==692586== HEAP SUMMARY: ==692586== in use at exit: 1,875,918 bytes in 11,735 blocks ==692586== total heap usage: 7,739,692 allocs, 7,727,957 frees, 2,377,128,644 bytes allocated ==692586== ==692586== LEAK SUMMARY: ==692586== definitely lost: 0 bytes in 0 blocks ==692586== indirectly lost: 0 bytes in 0 blocks ==692586== possibly lost: 0 bytes in 0 blocks ==692586== still reachable: 56 bytes in 3 blocks ==692586== suppressed: 1,875,862 bytes in 11,732 blocks ==692586== Reachable blocks (those to which a pointer was found) are not shown. ==692586== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==692586== ==692586== For lists of detected and suppressed errors, rerun with: -s ==692586== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 52 from 52)