==691645== Memcheck, a memory error detector
==691645== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al.
==691645== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info
==691645== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestTransformations -malloc_debug -malloc_dump -memory_info
==691645== Parent PID: 691175
==691645== 
==691645== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints.
==691645==    This could cause spurious value errors to appear.
==691645==    See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper.
==691645== Warning: noted but unhandled ioctl 0x27 with no size/direction hints.
==691645==    This could cause spurious value errors to appear.
==691645==    See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper.
==691645== Warning: noted but unhandled ioctl 0x25 with no size/direction hints.
==691645==    This could cause spurious value errors to appear.
==691645==    See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper.
==691645== Warning: noted but unhandled ioctl 0x17 with no size/direction hints.
==691645==    This could cause spurious value errors to appear.
==691645==    See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper.
==691645== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess)
==691645== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess)
==691645== Warning: set address range perms: large range [0x1351f000, 0x3351e000) (noaccess)
==691645== 
==691645== FILE DESCRIPTORS: 14 open (3 std) at exit.
==691645== Open file descriptor 23: /dev/nvidia0
==691645==    at 0x6D397A4: open (open64.c:41)
==691645==    by 0x125CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==691645==    by 0x125CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==691645==    by 0x12666B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==691645==    by 0x12554026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==691645==    by 0x1255D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==691645==    by 0x125D5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==691645==    by 0x1265FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==691645==    by 0x1241A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==691645==    by 0x123648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==691645==    by 0x83F0023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==691645==    by 0x83F0FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==691645==    by 0x100CC46A: ???
==691645==    by 0xBB5FF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==691645==    by 0xBB3BB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==691645==    by 0xBAECCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==691645==    by 0xBA19EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==691645==    by 0x100BAF03: ???
==691645==    by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==691645==    by 0x8385418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==691645==    by 0x831ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==691645==    by 0x7015D38: PetscInitialize (pinit.c:924)
==691645==    by 0x654C2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==691645==    by 0x654C32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==691645==    by 0x1269D2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==691645==    by 0x121A8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==691645==    by 0x124680: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==691645==    by 0x124520: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==691645==    by 0x124BB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==691645==    by 0x11FEB5: main (TestTransformations.cpp:19)
==691645== 
==691645== Open file descriptor 22: /dev/nvidia0
==691645==    at 0x6D397A4: open (open64.c:41)
==691645==    by 0x125CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==691645==    by 0x125CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==691645==    by 0x1255407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==691645==    by 0x1255D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==691645==    by 0x125D5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==691645==    by 0x1265FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==691645==    by 0x1241A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==691645==    by 0x123648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==691645==    by 0x83F0023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==691645==    by 0x83F0FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==691645==    by 0x100CC46A: ???
==691645==    by 0xBB5FF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==691645==    by 0xBB3BB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==691645==    by 0xBAECCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==691645==    by 0xBA19EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==691645==    by 0x100BAF03: ???
==691645==    by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==691645==    by 0x8385418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==691645==    by 0x831ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==691645==    by 0x7015D38: PetscInitialize (pinit.c:924)
==691645==    by 0x654C2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==691645==    by 0x654C32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==691645==    by 0x1269D2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==691645==    by 0x121A8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==691645==    by 0x124680: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==691645==    by 0x124520: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==691645==    by 0x124BB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==691645==    by 0x11FEB5: main (TestTransformations.cpp:19)
==691645== 
==691645== Open file descriptor 21: /dev/nvidia0
==691645==    at 0x6D397A4: open (open64.c:41)
==691645==    by 0x125CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==691645==    by 0x125CC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==691645==    by 0x1255DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==691645==    by 0x125D54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==691645==    by 0x1265FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==691645==    by 0x1241A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==691645==    by 0x123648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==691645==    by 0x83F0023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==691645==    by 0x83F0FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==691645==    by 0x100CC46A: ???
==691645==    by 0xBB5FF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==691645==    by 0xBB3BB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==691645==    by 0xBAECCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==691645==    by 0xBA19EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==691645==    by 0x100BAF03: ???
==691645==    by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==691645==    by 0x8385418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==691645==    by 0x831ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==691645==    by 0x7015D38: PetscInitialize (pinit.c:924)
==691645==    by 0x654C2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==691645==    by 0x654C32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==691645==    by 0x1269D2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==691645==    by 0x121A8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==691645==    by 0x124680: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==691645==    by 0x124520: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==691645==    by 0x124BB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==691645==    by 0x11FEB5: main (TestTransformations.cpp:19)
==691645== 
==691645== Open file descriptor 20: /dev/nvidia-uvm
==691645==    at 0x6D397A4: open (open64.c:41)
==691645==    by 0x12436F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==691645==    by 0x1241A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==691645==    by 0x123648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==691645==    by 0x83F0023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==691645==    by 0x83F0FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==691645==    by 0x100CC46A: ???
==691645==    by 0xBB5FF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==691645==    by 0xBB3BB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==691645==    by 0xBAECCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==691645==    by 0xBA19EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==691645==    by 0x100BAF03: ???
==691645==    by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==691645==    by 0x8385418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==691645==    by 0x831ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==691645==    by 0x7015D38: PetscInitialize (pinit.c:924)
==691645==    by 0x654C2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==691645==    by 0x654C32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==691645==    by 0x1269D2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==691645==    by 0x121A8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==691645==    by 0x124680: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==691645==    by 0x124520: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==691645==    by 0x124BB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==691645==    by 0x11FEB5: main (TestTransformations.cpp:19)
==691645== 
==691645== Open file descriptor 19: /dev/nvidiactl
==691645==    at 0x6D397A4: open (open64.c:41)
==691645==    by 0x125CB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==691645==    by 0x125D08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==691645==    by 0x1241A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==691645==    by 0x123648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02)
==691645==    by 0x83F0023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==691645==    by 0x83F0FEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0)
==691645==    by 0x100CC46A: ???
==691645==    by 0xBB5FF05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==691645==    by 0xBB3BB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2)
==691645==    by 0xBAECCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==691645==    by 0xBA19EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==691645==    by 0x100BAF03: ???
==691645==    by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==691645==    by 0x8385418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==691645==    by 0x831ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==691645==    by 0x7015D38: PetscInitialize (pinit.c:924)
==691645==    by 0x654C2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==691645==    by 0x654C32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==691645==    by 0x1269D2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==691645==    by 0x121A8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==691645==    by 0x124680: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==691645==    by 0x124520: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==691645==    by 0x124BB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==691645==    by 0x11FEB5: main (TestTransformations.cpp:19)
==691645== 
==691645== Open file descriptor 12:
==691645==    at 0x6D3A26D: pipe (pipe.c:29)
==691645==    by 0x100BA07D: ???
==691645==    by 0xBA4E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==691645==    by 0x8385418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==691645==    by 0x831ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==691645==    by 0x7015D38: PetscInitialize (pinit.c:924)
==691645==    by 0x654C2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==691645==    by 0x654C32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==691645==    by 0x1269D2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==691645==    by 0x121A8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==691645==    by 0x124680: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==691645==    by 0x124520: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==691645==    by 0x124BB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==691645==    by 0x11FEB5: main (TestTransformations.cpp:19)
==691645== 
==691645== Open file descriptor 8: /dev/shm/open_mpi.0000
==691645==    at 0x6D3EC0C: __open_nocancel (open64_nocancel.c:39)
==691645==    by 0x6CC2BCF: shm_open@@GLIBC_2.34 (shm_open.c:40)
==691645==    by 0x6581822: ???
==691645==    by 0x658196F: ???
==691645==    by 0xBAF36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==691645==    by 0xBAF3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==691645==    by 0xBAA9922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2)
==691645==    by 0xBA4E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2)
==691645==    by 0x8385418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==691645==    by 0x831ED7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2)
==691645==    by 0x7015D38: PetscInitialize (pinit.c:924)
==691645==    by 0x654C2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==691645==    by 0x654C32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==691645==    by 0x1269D2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==691645==    by 0x121A8D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==691645==    by 0x124680: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==691645==    by 0x124520: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==691645==    by 0x124BB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==691645==    by 0x11FEB5: main (TestTransformations.cpp:19)
==691645== 
==691645== Open file descriptor 116:
==691645==    <inherited from parent>
==691645== 
==691645== Open file descriptor 113:
==691645==    <inherited from parent>
==691645== 
==691645== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTransformations_valgrind.txt
==691645==    <inherited from parent>
==691645== 
==691645== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp
==691645==    <inherited from parent>
==691645== 
==691645== 
==691645== HEAP SUMMARY:
==691645==     in use at exit: 1,875,622 bytes in 11,738 blocks
==691645==   total heap usage: 122,274 allocs, 110,536 frees, 1,538,206,072 bytes allocated
==691645== 
==691645== LEAK SUMMARY:
==691645==    definitely lost: 0 bytes in 0 blocks
==691645==    indirectly lost: 0 bytes in 0 blocks
==691645==      possibly lost: 0 bytes in 0 blocks
==691645==    still reachable: 24 bytes in 2 blocks
==691645==         suppressed: 1,875,598 bytes in 11,736 blocks
==691645== Reachable blocks (those to which a pointer was found) are not shown.
==691645== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==691645== 
==691645== For lists of detected and suppressed errors, rerun with: -s
==691645== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 53 from 53)