==691864== Memcheck, a memory error detector ==691864== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==691864== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==691864== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/mesh/test/TestVertexMesh -malloc_debug -malloc_dump -memory_info ==691864== Parent PID: 691175 ==691864== ==691864== Warning: noted but unhandled ioctl 0x30000001 with no size/direction hints. ==691864== This could cause spurious value errors to appear. ==691864== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==691864== Warning: noted but unhandled ioctl 0x27 with no size/direction hints. ==691864== This could cause spurious value errors to appear. ==691864== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==691864== Warning: noted but unhandled ioctl 0x25 with no size/direction hints. ==691864== This could cause spurious value errors to appear. ==691864== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==691864== Warning: noted but unhandled ioctl 0x17 with no size/direction hints. ==691864== This could cause spurious value errors to appear. ==691864== See README_MISSING_SYSCALL_OR_IOCTL for guidance on writing a proper wrapper. ==691864== Warning: set address range perms: large range [0x200000000, 0x700000000) (noaccess) ==691864== Warning: set address range perms: large range [0x700000000, 0x900000000) (noaccess) ==691864== Warning: set address range perms: large range [0x1351f000, 0x3351e000) (noaccess) ==691864== ==691864== FILE DESCRIPTORS: 14 open (3 std) at exit. ==691864== Open file descriptor 23: /dev/nvidia0 ==691864== at 0x82327A4: open (open64.c:41) ==691864== by 0x125CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691864== by 0x125CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691864== by 0x12666B8D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691864== by 0x12554026: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691864== by 0x1255D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691864== by 0x125D5BA7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691864== by 0x1265FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691864== by 0x1241A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691864== by 0x123648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691864== by 0xB4BB023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==691864== by 0xB4BBFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==691864== by 0x100CE46A: ??? ==691864== by 0xBB10F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==691864== by 0xBAECB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==691864== by 0xBA9BCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==691864== by 0xB9C8EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==691864== by 0x100BCF03: ??? ==691864== by 0xB9FD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==691864== by 0x7A54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==691864== by 0x79EDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==691864== by 0x66E4D38: PetscInitialize (pinit.c:924) ==691864== by 0x654C2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==691864== by 0x654C32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==691864== by 0x14372D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==691864== by 0x13DAFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==691864== by 0x14137A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==691864== by 0x14121A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==691864== by 0x1418B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==691864== by 0x13BF25: main (TestVertexMesh.cpp:19) ==691864== ==691864== Open file descriptor 22: /dev/nvidia0 ==691864== at 0x82327A4: open (open64.c:41) ==691864== by 0x125CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691864== by 0x125CD594: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691864== by 0x1255407E: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691864== by 0x1255D942: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691864== by 0x125D5831: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691864== by 0x1265FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691864== by 0x1241A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691864== by 0x123648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691864== by 0xB4BB023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==691864== by 0xB4BBFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==691864== by 0x100CE46A: ??? ==691864== by 0xBB10F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==691864== by 0xBAECB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==691864== by 0xBA9BCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==691864== by 0xB9C8EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==691864== by 0x100BCF03: ??? ==691864== by 0xB9FD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==691864== by 0x7A54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==691864== by 0x79EDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==691864== by 0x66E4D38: PetscInitialize (pinit.c:924) ==691864== by 0x654C2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==691864== by 0x654C32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==691864== by 0x14372D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==691864== by 0x13DAFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==691864== by 0x14137A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==691864== by 0x14121A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==691864== by 0x1418B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==691864== by 0x13BF25: main (TestVertexMesh.cpp:19) ==691864== ==691864== Open file descriptor 21: /dev/nvidia0 ==691864== at 0x82327A4: open (open64.c:41) ==691864== by 0x125CB6D0: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691864== by 0x125CC51D: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691864== by 0x1255DEE3: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691864== by 0x125D54C2: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691864== by 0x1265FC86: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691864== by 0x1241A722: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691864== by 0x123648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691864== by 0xB4BB023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==691864== by 0xB4BBFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==691864== by 0x100CE46A: ??? ==691864== by 0xBB10F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==691864== by 0xBAECB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==691864== by 0xBA9BCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==691864== by 0xB9C8EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==691864== by 0x100BCF03: ??? ==691864== by 0xB9FD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==691864== by 0x7A54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==691864== by 0x79EDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==691864== by 0x66E4D38: PetscInitialize (pinit.c:924) ==691864== by 0x654C2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==691864== by 0x654C32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==691864== by 0x14372D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==691864== by 0x13DAFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==691864== by 0x14137A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==691864== by 0x14121A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==691864== by 0x1418B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==691864== by 0x13BF25: main (TestVertexMesh.cpp:19) ==691864== ==691864== Open file descriptor 20: /dev/nvidia-uvm ==691864== at 0x82327A4: open (open64.c:41) ==691864== by 0x12436F20: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691864== by 0x1241A705: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691864== by 0x123648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691864== by 0xB4BB023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==691864== by 0xB4BBFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==691864== by 0x100CE46A: ??? ==691864== by 0xBB10F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==691864== by 0xBAECB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==691864== by 0xBA9BCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==691864== by 0xB9C8EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==691864== by 0x100BCF03: ??? ==691864== by 0xB9FD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==691864== by 0x7A54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==691864== by 0x79EDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==691864== by 0x66E4D38: PetscInitialize (pinit.c:924) ==691864== by 0x654C2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==691864== by 0x654C32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==691864== by 0x14372D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==691864== by 0x13DAFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==691864== by 0x14137A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==691864== by 0x14121A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==691864== by 0x1418B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==691864== by 0x13BF25: main (TestVertexMesh.cpp:19) ==691864== ==691864== Open file descriptor 19: /dev/nvidiactl ==691864== at 0x82327A4: open (open64.c:41) ==691864== by 0x125CB296: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691864== by 0x125D08A5: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691864== by 0x1241A665: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691864== by 0x123648D7: ??? (in /usr/lib/x86_64-linux-gnu/libnvidia-opencl.so.470.199.02) ==691864== by 0xB4BB023: ??? (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==691864== by 0xB4BBFEA: clGetPlatformIDs (in /usr/lib/x86_64-linux-gnu/libOpenCL.so.1.0.0) ==691864== by 0x100CE46A: ??? ==691864== by 0xBB10F05: ??? (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==691864== by 0xBAECB30: hwloc_topology_load (in /usr/lib/x86_64-linux-gnu/libhwloc.so.15.5.2) ==691864== by 0xBA9BCB5: opal_hwloc_base_get_topology (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==691864== by 0xB9C8EF6: orte_ess_base_proc_binding (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==691864== by 0x100BCF03: ??? ==691864== by 0xB9FD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==691864== by 0x7A54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==691864== by 0x79EDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==691864== by 0x66E4D38: PetscInitialize (pinit.c:924) ==691864== by 0x654C2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==691864== by 0x654C32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==691864== by 0x14372D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==691864== by 0x13DAFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==691864== by 0x14137A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==691864== by 0x14121A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==691864== by 0x1418B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==691864== by 0x13BF25: main (TestVertexMesh.cpp:19) ==691864== ==691864== Open file descriptor 12: ==691864== at 0x823326D: pipe (pipe.c:29) ==691864== by 0x100BC07D: ??? ==691864== by 0xB9FD4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==691864== by 0x7A54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==691864== by 0x79EDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==691864== by 0x66E4D38: PetscInitialize (pinit.c:924) ==691864== by 0x654C2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==691864== by 0x654C32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==691864== by 0x14372D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==691864== by 0x13DAFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==691864== by 0x14137A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==691864== by 0x14121A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==691864== by 0x1418B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==691864== by 0x13BF25: main (TestVertexMesh.cpp:19) ==691864== ==691864== Open file descriptor 8: /dev/shm/open_mpi.0000 ==691864== at 0x8237C0C: __open_nocancel (open64_nocancel.c:39) ==691864== by 0x81BBBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==691864== by 0x6581822: ??? ==691864== by 0x658196F: ??? ==691864== by 0xBAA26DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==691864== by 0xBAA2938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==691864== by 0xBA58922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==691864== by 0xB9FD2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==691864== by 0x7A54418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==691864== by 0x79EDD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==691864== by 0x66E4D38: PetscInitialize (pinit.c:924) ==691864== by 0x654C2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==691864== by 0x654C32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==691864== by 0x14372D: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==691864== by 0x13DAFD: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==691864== by 0x14137A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==691864== by 0x14121A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==691864== by 0x1418B1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==691864== by 0x13BF25: main (TestVertexMesh.cpp:19) ==691864== ==691864== Open file descriptor 116: ==691864== ==691864== ==691864== Open file descriptor 113: ==691864== ==691864== ==691864== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestVertexMesh_valgrind.txt ==691864== ==691864== ==691864== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==691864== ==691864== ==691864== ==691864== HEAP SUMMARY: ==691864== in use at exit: 1,878,185 bytes in 11,739 blocks ==691864== total heap usage: 102,018 allocs, 90,279 frees, 1,541,085,335 bytes allocated ==691864== ==691864== LEAK SUMMARY: ==691864== definitely lost: 0 bytes in 0 blocks ==691864== indirectly lost: 0 bytes in 0 blocks ==691864== possibly lost: 0 bytes in 0 blocks ==691864== still reachable: 2,576 bytes in 3 blocks ==691864== suppressed: 1,875,609 bytes in 11,736 blocks ==691864== Reachable blocks (those to which a pointer was found) are not shown. ==691864== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==691864== ==691864== For lists of detected and suppressed errors, rerun with: -s ==691864== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 56 from 56)