==51934== Memcheck, a memory error detector ==51934== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==51934== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==51934== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestAlarcon2004OxygenBasedCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==51934== Parent PID: 50368 ==51934== ==51934== ==51934== FILE DESCRIPTORS: 9 open (3 std) at exit. ==51934== Open file descriptor 12: ==51934== at 0xEFA426D: pipe (pipe.c:29) ==51934== by 0x196B007D: ??? ==51934== by 0x13C614CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==51934== by 0xEBF1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==51934== by 0xEB8AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==51934== by 0xD881D38: PetscInitialize (pinit.c:924) ==51934== by 0xD6E82DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==51934== by 0xD6E832D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==51934== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==51934== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==51934== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==51934== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==51934== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==51934== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==51934== ==51934== Open file descriptor 8: /dev/shm/open_mpi.0000 ==51934== at 0xEFA8C0C: __open_nocancel (open64_nocancel.c:39) ==51934== by 0xEF2CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==51934== by 0xD723822: ??? ==51934== by 0xD72396F: ??? ==51934== by 0x13D066DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==51934== by 0x13D06938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==51934== by 0x13CBC922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==51934== by 0x13C612DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==51934== by 0xEBF1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==51934== by 0xEB8AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==51934== by 0xD881D38: PetscInitialize (pinit.c:924) ==51934== by 0xD6E82DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==51934== by 0xD6E832D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==51934== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==51934== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==51934== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==51934== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==51934== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==51934== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==51934== ==51934== Open file descriptor 115: ==51934== ==51934== ==51934== Open file descriptor 112: ==51934== ==51934== ==51934== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt ==51934== ==51934== ==51934== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==51934== ==51934== ==51934== ==51934== HEAP SUMMARY: ==51934== in use at exit: 835,591 bytes in 11,676 blocks ==51934== total heap usage: 174,468 allocs, 162,792 frees, 1,551,383,621 bytes allocated ==51934== ==51934== LEAK SUMMARY: ==51934== definitely lost: 0 bytes in 0 blocks ==51934== indirectly lost: 0 bytes in 0 blocks ==51934== possibly lost: 0 bytes in 0 blocks ==51934== still reachable: 24 bytes in 2 blocks ==51934== suppressed: 835,567 bytes in 11,674 blocks ==51934== Reachable blocks (those to which a pointer was found) are not shown. ==51934== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==51934== ==51934== For lists of detected and suppressed errors, rerun with: -s ==51934== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)