==50613== Memcheck, a memory error detector ==50613== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==50613== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==50613== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestHdf5DataWriter -malloc_debug -malloc_dump -memory_info ==50613== Parent PID: 50368 ==50613== ==50613== Warning: invalid file descriptor -1 in syscall close() ==50613== ==50613== FILE DESCRIPTORS: 9 open (3 std) at exit. ==50613== Open file descriptor 12: ==50613== at 0x659C26D: pipe (pipe.c:29) ==50613== by 0xAF1607D: ??? ==50613== by 0x8F454CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==50613== by 0x61EB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==50613== by 0x6184D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==50613== by 0x4A96D38: PetscInitialize (pinit.c:924) ==50613== by 0x496D2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==50613== by 0x496D32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==50613== by 0x11BE02: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==50613== by 0x116E2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==50613== by 0x119D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==50613== by 0x119BF6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==50613== by 0x11A28D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==50613== by 0x115255: main (TestHdf5DataWriter.cpp:19) ==50613== ==50613== Open file descriptor 8: /dev/shm/open_mpi.0000 ==50613== at 0x65A0C0C: __open_nocancel (open64_nocancel.c:39) ==50613== by 0x6524BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==50613== by 0x5D26822: ??? ==50613== by 0x5D2696F: ??? ==50613== by 0x8FEA6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==50613== by 0x8FEA938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==50613== by 0x8FA0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==50613== by 0x8F452DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==50613== by 0x61EB418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==50613== by 0x6184D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==50613== by 0x4A96D38: PetscInitialize (pinit.c:924) ==50613== by 0x496D2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==50613== by 0x496D32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==50613== by 0x11BE02: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==50613== by 0x116E2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==50613== by 0x119D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==50613== by 0x119BF6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==50613== by 0x11A28D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==50613== by 0x115255: main (TestHdf5DataWriter.cpp:19) ==50613== ==50613== Open file descriptor 115: ==50613== ==50613== ==50613== Open file descriptor 112: ==50613== ==50613== ==50613== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5DataWriter_valgrind.txt ==50613== ==50613== ==50613== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==50613== ==50613== ==50613== ==50613== HEAP SUMMARY: ==50613== in use at exit: 835,623 bytes in 11,686 blocks ==50613== total heap usage: 123,416 allocs, 111,730 frees, 1,614,519,578 bytes allocated ==50613== ==50613== LEAK SUMMARY: ==50613== definitely lost: 0 bytes in 0 blocks ==50613== indirectly lost: 0 bytes in 0 blocks ==50613== possibly lost: 0 bytes in 0 blocks ==50613== still reachable: 24 bytes in 2 blocks ==50613== suppressed: 835,599 bytes in 11,684 blocks ==50613== Reachable blocks (those to which a pointer was found) are not shown. ==50613== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==50613== ==50613== For lists of detected and suppressed errors, rerun with: -s ==50613== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 98 from 35)