==68729== Memcheck, a memory error detector ==68729== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==68729== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==68729== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestMonodomainProblem -malloc_debug -malloc_dump -memory_info ==68729== Parent PID: 50368 ==68729== ==68729== Warning: invalid file descriptor -1 in syscall close() ==68729== ==68729== FILE DESCRIPTORS: 9 open (3 std) at exit. ==68729== Open file descriptor 12: ==68729== at 0xC10F26D: pipe (pipe.c:29) ==68729== by 0x1432707D: ??? ==68729== by 0xFFF74CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==68729== by 0xB9FD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==68729== by 0xB996D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==68729== by 0xA2D8D38: PetscInitialize (pinit.c:924) ==68729== by 0xA13D2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==68729== by 0xA13D32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==68729== by 0x14A2B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==68729== by 0x14182D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==68729== by 0x144A20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==68729== by 0x1448C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==68729== by 0x144F57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==68729== by 0x13FC05: main (TestMonodomainProblem.cpp:19) ==68729== ==68729== Open file descriptor 8: /dev/shm/open_mpi.0000 ==68729== at 0xC113C0C: __open_nocancel (open64_nocancel.c:39) ==68729== by 0xC097BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==68729== by 0xA178822: ??? ==68729== by 0xA17896F: ??? ==68729== by 0x1009E6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==68729== by 0x1009E938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==68729== by 0x10054922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==68729== by 0xFFF72DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==68729== by 0xB9FD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==68729== by 0xB996D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==68729== by 0xA2D8D38: PetscInitialize (pinit.c:924) ==68729== by 0xA13D2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==68729== by 0xA13D32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==68729== by 0x14A2B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==68729== by 0x14182D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==68729== by 0x144A20: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==68729== by 0x1448C0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==68729== by 0x144F57: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==68729== by 0x13FC05: main (TestMonodomainProblem.cpp:19) ==68729== ==68729== Open file descriptor 115: ==68729== ==68729== ==68729== Open file descriptor 112: ==68729== ==68729== ==68729== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestMonodomainProblem_valgrind.txt ==68729== ==68729== ==68729== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==68729== ==68729== ==68729== ==68729== HEAP SUMMARY: ==68729== in use at exit: 836,024 bytes in 11,682 blocks ==68729== total heap usage: 6,626,529 allocs, 6,614,847 frees, 4,220,364,353 bytes allocated ==68729== ==68729== LEAK SUMMARY: ==68729== definitely lost: 0 bytes in 0 blocks ==68729== indirectly lost: 0 bytes in 0 blocks ==68729== possibly lost: 0 bytes in 0 blocks ==68729== still reachable: 24 bytes in 2 blocks ==68729== suppressed: 836,000 bytes in 11,680 blocks ==68729== Reachable blocks (those to which a pointer was found) are not shown. ==68729== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==68729== ==68729== For lists of detected and suppressed errors, rerun with: -s ==68729== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 131 from 37)