==414680== Memcheck, a memory error detector ==414680== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==414680== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==414680== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestAlarcon2004OxygenBasedCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==414680== Parent PID: 413147 ==414680== ==414680== ==414680== FILE DESCRIPTORS: 9 open (3 std) at exit. ==414680== Open file descriptor 12: ==414680== at 0xEF9526D: pipe (pipe.c:29) ==414680== by 0x1977607D: ??? ==414680== by 0x1390C4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==414680== by 0xEBE2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==414680== by 0xEB7BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==414680== by 0xD872D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==414680== by 0xD6E42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==414680== by 0xD6E432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==414680== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==414680== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==414680== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==414680== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==414680== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==414680== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==414680== ==414680== Open file descriptor 8: /dev/shm/open_mpi.0000 ==414680== at 0xEF99C0C: __open_nocancel (open64_nocancel.c:39) ==414680== by 0xEF1DBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==414680== by 0xD719822: ??? ==414680== by 0xD71996F: ??? ==414680== by 0x139B16DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==414680== by 0x139B1938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==414680== by 0x13967922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==414680== by 0x1390C2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==414680== by 0xEBE2418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==414680== by 0xEB7BD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==414680== by 0xD872D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==414680== by 0xD6E42DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==414680== by 0xD6E432D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==414680== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==414680== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==414680== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==414680== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==414680== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==414680== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==414680== ==414680== Open file descriptor 116: ==414680== ==414680== ==414680== Open file descriptor 113: ==414680== ==414680== ==414680== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt ==414680== ==414680== ==414680== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==414680== ==414680== ==414680== ==414680== HEAP SUMMARY: ==414680== in use at exit: 857,987 bytes in 12,112 blocks ==414680== total heap usage: 174,753 allocs, 162,641 frees, 1,554,108,511 bytes allocated ==414680== ==414680== LEAK SUMMARY: ==414680== definitely lost: 0 bytes in 0 blocks ==414680== indirectly lost: 0 bytes in 0 blocks ==414680== possibly lost: 0 bytes in 0 blocks ==414680== still reachable: 24 bytes in 2 blocks ==414680== suppressed: 857,963 bytes in 12,110 blocks ==414680== Reachable blocks (those to which a pointer was found) are not shown. ==414680== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==414680== ==414680== For lists of detected and suppressed errors, rerun with: -s ==414680== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 23 from 23)