==415379== Memcheck, a memory error detector ==415379== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==415379== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==415379== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithCaBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==415379== Parent PID: 413147 ==415379== ==415379== ==415379== FILE DESCRIPTORS: 9 open (3 std) at exit. ==415379== Open file descriptor 12: ==415379== at 0xFDA126D: pipe (pipe.c:29) ==415379== by 0x1977707D: ??? ==415379== by 0x14E874CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==415379== by 0x119FC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==415379== by 0x11995D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==415379== by 0x1068CD38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==415379== by 0xF0FD2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==415379== by 0xF0FD32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==415379== by 0x1D43E2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==415379== by 0x1CDD79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==415379== by 0x1D14B0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==415379== by 0x1D1350: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==415379== by 0x1D19E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==415379== by 0x1CC195: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==415379== ==415379== Open file descriptor 8: /dev/shm/open_mpi.0000 ==415379== at 0xFDA5C0C: __open_nocancel (open64_nocancel.c:39) ==415379== by 0xFD29BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==415379== by 0xF132822: ??? ==415379== by 0xF13296F: ??? ==415379== by 0x14F2C6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==415379== by 0x14F2C938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==415379== by 0x14EE2922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==415379== by 0x14E872DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==415379== by 0x119FC418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==415379== by 0x11995D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==415379== by 0x1068CD38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==415379== by 0xF0FD2DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==415379== by 0xF0FD32D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==415379== by 0x1D43E2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==415379== by 0x1CDD79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==415379== by 0x1D14B0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==415379== by 0x1D1350: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==415379== by 0x1D19E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==415379== by 0x1CC195: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==415379== ==415379== Open file descriptor 116: ==415379== ==415379== ==415379== Open file descriptor 113: ==415379== ==415379== ==415379== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithCaBasedCellPopulation_valgrind.txt ==415379== ==415379== ==415379== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==415379== ==415379== ==415379== ==415379== HEAP SUMMARY: ==415379== in use at exit: 857,959 bytes in 12,109 blocks ==415379== total heap usage: 6,556,414 allocs, 6,544,305 frees, 8,227,986,729 bytes allocated ==415379== ==415379== LEAK SUMMARY: ==415379== definitely lost: 0 bytes in 0 blocks ==415379== indirectly lost: 0 bytes in 0 blocks ==415379== possibly lost: 0 bytes in 0 blocks ==415379== still reachable: 56 bytes in 3 blocks ==415379== suppressed: 857,903 bytes in 12,106 blocks ==415379== Reachable blocks (those to which a pointer was found) are not shown. ==415379== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==415379== ==415379== For lists of detected and suppressed errors, rerun with: -s ==415379== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 19)