==414722== Memcheck, a memory error detector ==414722== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==414722== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==414722== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestTysonNovak2001OdeSystem -malloc_debug -malloc_dump -memory_info ==414722== Parent PID: 413147 ==414722== ==414722== ==414722== FILE DESCRIPTORS: 9 open (3 std) at exit. ==414722== Open file descriptor 12: ==414722== at 0xDB5126D: pipe (pipe.c:29) ==414722== by 0x1977407D: ??? ==414722== by 0x14D1E4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==414722== by 0x11152418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==414722== by 0x110EBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==414722== by 0xFDE2D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==414722== by 0xD7572DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==414722== by 0xD75732D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==414722== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==414722== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==414722== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==414722== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==414722== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==414722== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==414722== ==414722== Open file descriptor 8: /dev/shm/open_mpi.0000 ==414722== at 0xDB55C0C: __open_nocancel (open64_nocancel.c:39) ==414722== by 0xDAD9BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==414722== by 0xD78C822: ??? ==414722== by 0xD78C96F: ??? ==414722== by 0x14DC36DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==414722== by 0x14DC3938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==414722== by 0x14D79922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==414722== by 0x14D1E2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==414722== by 0x11152418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==414722== by 0x110EBD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==414722== by 0xFDE2D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==414722== by 0xD7572DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==414722== by 0xD75732D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==414722== by 0x12417A: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==414722== by 0x11F743: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==414722== by 0x121D24: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==414722== by 0x121C20: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==414722== by 0x122233: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==414722== by 0x11DF45: main (TestTysonNovak2001OdeSystem.cpp:18) ==414722== ==414722== Open file descriptor 116: ==414722== ==414722== ==414722== Open file descriptor 113: ==414722== ==414722== ==414722== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestTysonNovak2001OdeSystem_valgrind.txt ==414722== ==414722== ==414722== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==414722== ==414722== ==414722== ==414722== HEAP SUMMARY: ==414722== in use at exit: 857,987 bytes in 12,112 blocks ==414722== total heap usage: 67,059 allocs, 54,947 frees, 1,543,779,481 bytes allocated ==414722== ==414722== LEAK SUMMARY: ==414722== definitely lost: 0 bytes in 0 blocks ==414722== indirectly lost: 0 bytes in 0 blocks ==414722== possibly lost: 0 bytes in 0 blocks ==414722== still reachable: 24 bytes in 2 blocks ==414722== suppressed: 857,963 bytes in 12,110 blocks ==414722== Reachable blocks (those to which a pointer was found) are not shown. ==414722== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==414722== ==414722== For lists of detected and suppressed errors, rerun with: -s ==414722== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 23 from 23)