==160113== Memcheck, a memory error detector ==160113== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==160113== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==160113== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptSimulation2dWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==160113== Parent PID: 144319 ==160113== ==160113== ==160113== FILE DESCRIPTORS: 9 open (3 std) at exit. ==160113== Open file descriptor 12: ==160113== at 0x1192F26D: pipe (pipe.c:29) ==160113== by 0x1A6DF07D: ??? ==160113== by 0x158524CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==160113== by 0x11237418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==160113== by 0x111D0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==160113== by 0xFEC7D38: PetscInitialize (pinit.c:924) ==160113== by 0xFD2F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==160113== by 0xFD2F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==160113== by 0x224461: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==160113== by 0x21BE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==160113== by 0x21FA80: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==160113== by 0x21F920: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==160113== by 0x21FFB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==160113== by 0x21A295: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==160113== ==160113== Open file descriptor 8: /dev/shm/open_mpi.0000 ==160113== at 0x11933C0C: __open_nocancel (open64_nocancel.c:39) ==160113== by 0x118B7BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==160113== by 0xFD69822: ??? ==160113== by 0xFD6996F: ??? ==160113== by 0x158F76DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==160113== by 0x158F7938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==160113== by 0x158AD922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==160113== by 0x158522DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==160113== by 0x11237418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==160113== by 0x111D0D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==160113== by 0xFEC7D38: PetscInitialize (pinit.c:924) ==160113== by 0xFD2F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==160113== by 0xFD2F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==160113== by 0x224461: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==160113== by 0x21BE79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==160113== by 0x21FA80: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==160113== by 0x21F920: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==160113== by 0x21FFB7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==160113== by 0x21A295: main (TestCryptSimulation2dWithVertexBasedCellPopulation.cpp:19) ==160113== ==160113== Open file descriptor 115: ==160113== ==160113== ==160113== Open file descriptor 112: ==160113== ==160113== ==160113== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestCryptSimulation2dWithVertexBasedCellPopulation_valgrind.txt ==160113== ==160113== ==160113== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==160113== ==160113== ==160113== ==160113== HEAP SUMMARY: ==160113== in use at exit: 835,578 bytes in 11,673 blocks ==160113== total heap usage: 3,726,067 allocs, 3,714,394 frees, 1,823,284,855 bytes allocated ==160113== ==160113== LEAK SUMMARY: ==160113== definitely lost: 0 bytes in 0 blocks ==160113== indirectly lost: 0 bytes in 0 blocks ==160113== possibly lost: 0 bytes in 0 blocks ==160113== still reachable: 56 bytes in 3 blocks ==160113== suppressed: 835,522 bytes in 11,670 blocks ==160113== Reachable blocks (those to which a pointer was found) are not shown. ==160113== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==160113== ==160113== For lists of detected and suppressed errors, rerun with: -s ==160113== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)