==144557== Memcheck, a memory error detector ==144557== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==144557== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==144557== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestHdf5DataReader -malloc_debug -malloc_dump -memory_info ==144557== Parent PID: 144319 ==144557== ==144557== ==144557== FILE DESCRIPTORS: 9 open (3 std) at exit. ==144557== Open file descriptor 12: ==144557== at 0x646426D: pipe (pipe.c:29) ==144557== by 0xAF1507D: ??? ==144557== by 0x8F444CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==144557== by 0x665E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==144557== by 0x65F7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==144557== by 0x4A95D38: PetscInitialize (pinit.c:924) ==144557== by 0x496D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==144557== by 0x496D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==144557== by 0x11BB1C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==144557== by 0x117033: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==144557== by 0x119B8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==144557== by 0x119A2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==144557== by 0x11A0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==144557== by 0x1151B5: main (TestHdf5DataReader.cpp:19) ==144557== ==144557== Open file descriptor 8: /dev/shm/open_mpi.0000 ==144557== at 0x6468C0C: __open_nocancel (open64_nocancel.c:39) ==144557== by 0x63ECBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==144557== by 0x5D25822: ??? ==144557== by 0x5D2596F: ??? ==144557== by 0x8FE96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==144557== by 0x8FE9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==144557== by 0x8F9F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==144557== by 0x8F442DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==144557== by 0x665E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==144557== by 0x65F7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==144557== by 0x4A95D38: PetscInitialize (pinit.c:924) ==144557== by 0x496D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==144557== by 0x496D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==144557== by 0x11BB1C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==144557== by 0x117033: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==144557== by 0x119B8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==144557== by 0x119A2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==144557== by 0x11A0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==144557== by 0x1151B5: main (TestHdf5DataReader.cpp:19) ==144557== ==144557== Open file descriptor 115: ==144557== ==144557== ==144557== Open file descriptor 112: ==144557== ==144557== ==144557== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5DataReader_valgrind.txt ==144557== ==144557== ==144557== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==144557== ==144557== ==144557== ==144557== HEAP SUMMARY: ==144557== in use at exit: 835,628 bytes in 11,686 blocks ==144557== total heap usage: 66,889 allocs, 55,203 frees, 1,550,515,931 bytes allocated ==144557== ==144557== LEAK SUMMARY: ==144557== definitely lost: 0 bytes in 0 blocks ==144557== indirectly lost: 0 bytes in 0 blocks ==144557== possibly lost: 0 bytes in 0 blocks ==144557== still reachable: 24 bytes in 2 blocks ==144557== suppressed: 835,604 bytes in 11,684 blocks ==144557== Reachable blocks (those to which a pointer was found) are not shown. ==144557== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==144557== ==144557== For lists of detected and suppressed errors, rerun with: -s ==144557== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 41 from 35)