==144564== Memcheck, a memory error detector ==144564== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==144564== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==144564== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestHdf5DataWriter -malloc_debug -malloc_dump -memory_info ==144564== Parent PID: 144319 ==144564== ==144564== Warning: invalid file descriptor -1 in syscall close() ==144564== ==144564== FILE DESCRIPTORS: 9 open (3 std) at exit. ==144564== Open file descriptor 12: ==144564== at 0x659B26D: pipe (pipe.c:29) ==144564== by 0xAF1507D: ??? ==144564== by 0x8F444CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==144564== by 0x61EA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==144564== by 0x6183D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==144564== by 0x4A95D38: PetscInitialize (pinit.c:924) ==144564== by 0x496D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==144564== by 0x496D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==144564== by 0x11BE02: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==144564== by 0x116E2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==144564== by 0x119D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==144564== by 0x119BF6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==144564== by 0x11A28D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==144564== by 0x115255: main (TestHdf5DataWriter.cpp:19) ==144564== ==144564== Open file descriptor 8: /dev/shm/open_mpi.0000 ==144564== at 0x659FC0C: __open_nocancel (open64_nocancel.c:39) ==144564== by 0x6523BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==144564== by 0x5D25822: ??? ==144564== by 0x5D2596F: ??? ==144564== by 0x8FE96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==144564== by 0x8FE9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==144564== by 0x8F9F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==144564== by 0x8F442DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==144564== by 0x61EA418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==144564== by 0x6183D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==144564== by 0x4A95D38: PetscInitialize (pinit.c:924) ==144564== by 0x496D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==144564== by 0x496D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==144564== by 0x11BE02: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==144564== by 0x116E2D: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==144564== by 0x119D56: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==144564== by 0x119BF6: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==144564== by 0x11A28D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==144564== by 0x115255: main (TestHdf5DataWriter.cpp:19) ==144564== ==144564== Open file descriptor 115: ==144564== ==144564== ==144564== Open file descriptor 112: ==144564== ==144564== ==144564== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5DataWriter_valgrind.txt ==144564== ==144564== ==144564== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==144564== ==144564== ==144564== ==144564== HEAP SUMMARY: ==144564== in use at exit: 835,628 bytes in 11,686 blocks ==144564== total heap usage: 123,419 allocs, 111,733 frees, 1,614,519,819 bytes allocated ==144564== ==144564== LEAK SUMMARY: ==144564== definitely lost: 0 bytes in 0 blocks ==144564== indirectly lost: 0 bytes in 0 blocks ==144564== possibly lost: 0 bytes in 0 blocks ==144564== still reachable: 24 bytes in 2 blocks ==144564== suppressed: 835,604 bytes in 11,684 blocks ==144564== Reachable blocks (those to which a pointer was found) are not shown. ==144564== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==144564== ==144564== For lists of detected and suppressed errors, rerun with: -s ==144564== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 98 from 35)