==524008== Memcheck, a memory error detector ==524008== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==524008== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==524008== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d -malloc_debug -malloc_dump -memory_info ==524008== Parent PID: 522133 ==524008== ==524008== ==524008== FILE DESCRIPTORS: 9 open (3 std) at exit. ==524008== Open file descriptor 12: ==524008== at 0xE90926D: pipe (pipe.c:29) ==524008== by 0x18AE307D: ??? ==524008== by 0x140804CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==524008== by 0x105A8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==524008== by 0x10541D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==524008== by 0xF238D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==524008== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==524008== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==524008== by 0x1327B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==524008== by 0x12D7D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==524008== by 0x12FF28: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==524008== by 0x12FE23: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==524008== by 0x130437: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==524008== by 0x12BFD5: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==524008== ==524008== Open file descriptor 8: /dev/shm/open_mpi.0000 ==524008== at 0xE90DC0C: __open_nocancel (open64_nocancel.c:39) ==524008== by 0xE891BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==524008== by 0xE49F822: ??? ==524008== by 0xE49F96F: ??? ==524008== by 0x141256DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==524008== by 0x14125938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==524008== by 0x140DB922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==524008== by 0x140802DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==524008== by 0x105A8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==524008== by 0x10541D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==524008== by 0xF238D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==524008== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==524008== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==524008== by 0x1327B6: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==524008== by 0x12D7D3: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==524008== by 0x12FF28: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==524008== by 0x12FE23: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==524008== by 0x130437: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==524008== by 0x12BFD5: main (TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d.cpp:18) ==524008== ==524008== Open file descriptor 115: ==524008== ==524008== ==524008== Open file descriptor 112: ==524008== ==524008== ==524008== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithNodeBasedCellPopulationIn3d_valgrind.txt ==524008== ==524008== ==524008== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==524008== ==524008== ==524008== ==524008== HEAP SUMMARY: ==524008== in use at exit: 857,959 bytes in 12,109 blocks ==524008== total heap usage: 6,674,338 allocs, 6,662,229 frees, 9,199,428,643 bytes allocated ==524008== ==524008== LEAK SUMMARY: ==524008== definitely lost: 0 bytes in 0 blocks ==524008== indirectly lost: 0 bytes in 0 blocks ==524008== possibly lost: 0 bytes in 0 blocks ==524008== still reachable: 56 bytes in 3 blocks ==524008== suppressed: 857,903 bytes in 12,106 blocks ==524008== Reachable blocks (those to which a pointer was found) are not shown. ==524008== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==524008== ==524008== For lists of detected and suppressed errors, rerun with: -s ==524008== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 19)