==308955== Memcheck, a memory error detector ==308955== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==308955== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==308955== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestAlarcon2004OxygenBasedCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==308955== Parent PID: 307378 ==308955== ==308955== ==308955== FILE DESCRIPTORS: 9 open (3 std) at exit. ==308955== Open file descriptor 12: ==308955== at 0xEFA326D: pipe (pipe.c:29) ==308955== by 0x196AF07D: ??? ==308955== by 0x13C5F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==308955== by 0xEBF0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==308955== by 0xEB89D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==308955== by 0xD880D38: PetscInitialize (pinit.c:924) ==308955== by 0xD6E72DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==308955== by 0xD6E732D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==308955== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==308955== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==308955== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==308955== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==308955== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==308955== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==308955== ==308955== Open file descriptor 8: /dev/shm/open_mpi.0000 ==308955== at 0xEFA7C0C: __open_nocancel (open64_nocancel.c:39) ==308955== by 0xEF2BBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==308955== by 0xD722822: ??? ==308955== by 0xD72296F: ??? ==308955== by 0x13D046DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==308955== by 0x13D04938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==308955== by 0x13CBA922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==308955== by 0x13C5F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==308955== by 0xEBF0418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==308955== by 0xEB89D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==308955== by 0xD880D38: PetscInitialize (pinit.c:924) ==308955== by 0xD6E72DF: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==308955== by 0xD6E732D: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==308955== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==308955== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==308955== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==308955== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==308955== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==308955== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==308955== ==308955== Open file descriptor 116: ==308955== ==308955== ==308955== Open file descriptor 112: ==308955== ==308955== ==308955== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt ==308955== ==308955== ==308955== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==308955== ==308955== ==308955== ==308955== HEAP SUMMARY: ==308955== in use at exit: 835,596 bytes in 11,676 blocks ==308955== total heap usage: 174,471 allocs, 162,795 frees, 1,551,383,834 bytes allocated ==308955== ==308955== LEAK SUMMARY: ==308955== definitely lost: 0 bytes in 0 blocks ==308955== indirectly lost: 0 bytes in 0 blocks ==308955== possibly lost: 0 bytes in 0 blocks ==308955== still reachable: 24 bytes in 2 blocks ==308955== suppressed: 835,572 bytes in 11,674 blocks ==308955== Reachable blocks (those to which a pointer was found) are not shown. ==308955== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==308955== ==308955== For lists of detected and suppressed errors, rerun with: -s ==308955== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)