==608140== Memcheck, a memory error detector ==608140== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==608140== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==608140== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithPdes -malloc_debug -malloc_dump -memory_info ==608140== Parent PID: 606210 ==608140== ==608140== ==608140== FILE DESCRIPTORS: 10 open (3 std) at exit. ==608140== Open file descriptor 12: ==608140== at 0xECE926D: pipe (pipe.c:29) ==608140== by 0x18AE107D: ??? ==608140== by 0x140844CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==608140== by 0x105A8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==608140== by 0x10541D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==608140== by 0xF236D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==608140== by 0xE807153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==608140== by 0xE8071A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==608140== by 0x226492: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==608140== by 0x21FB31: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==608140== by 0x223638: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==608140== by 0x2234D8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==608140== by 0x223B6F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==608140== by 0x21DF15: main (TestOffLatticeSimulationWithPdes.cpp:19) ==608140== ==608140== Open file descriptor 8: /dev/shm/open_mpi.0000 ==608140== at 0xECEDC0C: __open_nocancel (open64_nocancel.c:39) ==608140== by 0xEC71BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==608140== by 0xE83B822: ??? ==608140== by 0xE83B96F: ??? ==608140== by 0x141296DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==608140== by 0x14129938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==608140== by 0x140DF922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==608140== by 0x140842DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==608140== by 0x105A8418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==608140== by 0x10541D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==608140== by 0xF236D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==608140== by 0xE807153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==608140== by 0xE8071A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==608140== by 0x226492: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==608140== by 0x21FB31: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==608140== by 0x223638: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==608140== by 0x2234D8: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==608140== by 0x223B6F: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==608140== by 0x21DF15: main (TestOffLatticeSimulationWithPdes.cpp:19) ==608140== ==608140== Open file descriptor 118: ==608140== ==608140== ==608140== Open file descriptor 114: ==608140== ==608140== ==608140== Open file descriptor 113: /etc/ssl/certs/ca-certificates.crt ==608140== ==608140== ==608140== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithPdes_valgrind.txt ==608140== ==608140== ==608140== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==608140== ==608140== ==608140== ==608140== HEAP SUMMARY: ==608140== in use at exit: 857,959 bytes in 12,109 blocks ==608140== total heap usage: 5,963,943 allocs, 5,951,834 frees, 2,781,004,361 bytes allocated ==608140== ==608140== LEAK SUMMARY: ==608140== definitely lost: 0 bytes in 0 blocks ==608140== indirectly lost: 0 bytes in 0 blocks ==608140== possibly lost: 0 bytes in 0 blocks ==608140== still reachable: 56 bytes in 3 blocks ==608140== suppressed: 857,903 bytes in 12,106 blocks ==608140== Reachable blocks (those to which a pointer was found) are not shown. ==608140== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==608140== ==608140== For lists of detected and suppressed errors, rerun with: -s ==608140== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 19)