==608175== Memcheck, a memory error detector ==608175== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==608175== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==608175== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulationWithVertexBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==608175== Parent PID: 606210 ==608175== ==608175== ==608175== FILE DESCRIPTORS: 10 open (3 std) at exit. ==608175== Open file descriptor 12: ==608175== at 0xFE0226D: pipe (pipe.c:29) ==608175== by 0x18AE107D: ??? ==608175== by 0x1402F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==608175== by 0xF968418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==608175== by 0xF901D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==608175== by 0xE5F8D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==608175== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==608175== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==608175== by 0x1FFE6B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==608175== by 0x1F9A79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==608175== by 0x1FD380: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==608175== by 0x1FD220: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==608175== by 0x1FD8B7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==608175== by 0x1F7E95: main (TestOffLatticeSimulationWithVertexBasedCellPopulation.cpp:19) ==608175== ==608175== Open file descriptor 8: /dev/shm/open_mpi.0000 ==608175== at 0xFE06C0C: __open_nocancel (open64_nocancel.c:39) ==608175== by 0xFD8ABCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==608175== by 0xE49F822: ??? ==608175== by 0xE49F96F: ??? ==608175== by 0x140D46DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==608175== by 0x140D4938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==608175== by 0x1408A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==608175== by 0x1402F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==608175== by 0xF968418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==608175== by 0xF901D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==608175== by 0xE5F8D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==608175== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==608175== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==608175== by 0x1FFE6B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==608175== by 0x1F9A79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==608175== by 0x1FD380: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==608175== by 0x1FD220: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==608175== by 0x1FD8B7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==608175== by 0x1F7E95: main (TestOffLatticeSimulationWithVertexBasedCellPopulation.cpp:19) ==608175== ==608175== Open file descriptor 118: ==608175== ==608175== ==608175== Open file descriptor 114: ==608175== ==608175== ==608175== Open file descriptor 113: /etc/ssl/certs/ca-certificates.crt ==608175== ==608175== ==608175== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulationWithVertexBasedCellPopulation_valgrind.txt ==608175== ==608175== ==608175== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==608175== ==608175== ==608175== ==608175== HEAP SUMMARY: ==608175== in use at exit: 857,959 bytes in 12,109 blocks ==608175== total heap usage: 8,417,943 allocs, 8,405,834 frees, 2,716,901,517 bytes allocated ==608175== ==608175== LEAK SUMMARY: ==608175== definitely lost: 0 bytes in 0 blocks ==608175== indirectly lost: 0 bytes in 0 blocks ==608175== possibly lost: 0 bytes in 0 blocks ==608175== still reachable: 56 bytes in 3 blocks ==608175== suppressed: 857,903 bytes in 12,106 blocks ==608175== Reachable blocks (those to which a pointer was found) are not shown. ==608175== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==608175== ==608175== For lists of detected and suppressed errors, rerun with: -s ==608175== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 19)