==608277== Memcheck, a memory error detector ==608277== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==608277== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==608277== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithCaBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==608277== Parent PID: 606210 ==608277== ==608277== ==608277== FILE DESCRIPTORS: 10 open (3 std) at exit. ==608277== Open file descriptor 12: ==608277== at 0xF10E26D: pipe (pipe.c:29) ==608277== by 0x18AE407D: ??? ==608277== by 0x141F44CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==608277== by 0x10D69418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==608277== by 0x10D02D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==608277== by 0xF9F9D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==608277== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==608277== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==608277== by 0x1D33E2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==608277== by 0x1CCD79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==608277== by 0x1D04B0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==608277== by 0x1D0350: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==608277== by 0x1D09E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==608277== by 0x1CB195: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==608277== ==608277== Open file descriptor 8: /dev/shm/open_mpi.0000 ==608277== at 0xF112C0C: __open_nocancel (open64_nocancel.c:39) ==608277== by 0xF096BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==608277== by 0xE49F822: ??? ==608277== by 0xE49F96F: ??? ==608277== by 0x142996DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==608277== by 0x14299938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==608277== by 0x1424F922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==608277== by 0x141F42DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==608277== by 0x10D69418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==608277== by 0x10D02D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==608277== by 0xF9F9D38: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.15.5) ==608277== by 0xE46B153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==608277== by 0xE46B1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==608277== by 0x1D33E2: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==608277== by 0x1CCD79: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==608277== by 0x1D04B0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==608277== by 0x1D0350: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==608277== by 0x1D09E7: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==608277== by 0x1CB195: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==608277== ==608277== Open file descriptor 118: ==608277== ==608277== ==608277== Open file descriptor 114: ==608277== ==608277== ==608277== Open file descriptor 113: /etc/ssl/certs/ca-certificates.crt ==608277== ==608277== ==608277== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithCaBasedCellPopulation_valgrind.txt ==608277== ==608277== ==608277== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==608277== ==608277== ==608277== ==608277== HEAP SUMMARY: ==608277== in use at exit: 857,959 bytes in 12,109 blocks ==608277== total heap usage: 6,555,880 allocs, 6,543,771 frees, 8,227,939,668 bytes allocated ==608277== ==608277== LEAK SUMMARY: ==608277== definitely lost: 0 bytes in 0 blocks ==608277== indirectly lost: 0 bytes in 0 blocks ==608277== possibly lost: 0 bytes in 0 blocks ==608277== still reachable: 56 bytes in 3 blocks ==608277== suppressed: 857,903 bytes in 12,106 blocks ==608277== Reachable blocks (those to which a pointer was found) are not shown. ==608277== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==608277== ==608277== For lists of detected and suppressed errors, rerun with: -s ==608277== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 19 from 19)