==483353== Memcheck, a memory error detector ==483353== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==483353== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==483353== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulation3d -malloc_debug -malloc_dump -memory_info ==483353== Parent PID: 481481 ==483353== ==483353== ==483353== FILE DESCRIPTORS: 10 open (3 std) at exit. ==483353== Open file descriptor 12: ==483353== at 0x1015626D: pipe (pipe.c:29) ==483353== by 0x18A1E07D: ??? ==483353== by 0x13F8F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==483353== by 0xF977418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==483353== by 0xF910D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==483353== by 0xE607D38: PetscInitialize (pinit.c:924) ==483353== by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==483353== by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==483353== by 0x1FF4E9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==483353== by 0x1F945F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==483353== by 0x1FC774: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==483353== by 0x1FC670: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==483353== by 0x1FCC83: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==483353== by 0x1F7C55: main (TestOffLatticeSimulation3d.cpp:18) ==483353== ==483353== Open file descriptor 8: /dev/shm/open_mpi.0000 ==483353== at 0x1015AC0C: __open_nocancel (open64_nocancel.c:39) ==483353== by 0x100DEBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==483353== by 0xE4A9822: ??? ==483353== by 0xE4A996F: ??? ==483353== by 0x140346DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==483353== by 0x14034938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==483353== by 0x13FEA922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==483353== by 0x13F8F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==483353== by 0xF977418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==483353== by 0xF910D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==483353== by 0xE607D38: PetscInitialize (pinit.c:924) ==483353== by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==483353== by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==483353== by 0x1FF4E9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==483353== by 0x1F945F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==483353== by 0x1FC774: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==483353== by 0x1FC670: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==483353== by 0x1FCC83: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==483353== by 0x1F7C55: main (TestOffLatticeSimulation3d.cpp:18) ==483353== ==483353== Open file descriptor 126: /usr/share/ca-certificates/mozilla/HiPKI_Root_CA_-_G1.crt ==483353== ==483353== ==483353== Open file descriptor 118: ==483353== ==483353== ==483353== Open file descriptor 115: ==483353== ==483353== ==483353== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulation3d_valgrind.txt ==483353== ==483353== ==483353== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==483353== ==483353== ==483353== ==483353== HEAP SUMMARY: ==483353== in use at exit: 835,628 bytes in 11,677 blocks ==483353== total heap usage: 862,662 allocs, 850,985 frees, 1,705,764,469 bytes allocated ==483353== ==483353== LEAK SUMMARY: ==483353== definitely lost: 0 bytes in 0 blocks ==483353== indirectly lost: 0 bytes in 0 blocks ==483353== possibly lost: 0 bytes in 0 blocks ==483353== still reachable: 56 bytes in 3 blocks ==483353== suppressed: 835,572 bytes in 11,674 blocks ==483353== Reachable blocks (those to which a pointer was found) are not shown. ==483353== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==483353== ==483353== For lists of detected and suppressed errors, rerun with: -s ==483353== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)