==518498== Memcheck, a memory error detector ==518498== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==518498== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==518498== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulation3d -malloc_debug -malloc_dump -memory_info ==518498== Parent PID: 516641 ==518498== ==518498== ==518498== FILE DESCRIPTORS: 9 open (3 std) at exit. ==518498== Open file descriptor 12: ==518498== at 0x1015626D: pipe (pipe.c:29) ==518498== by 0x18A1E07D: ??? ==518498== by 0x13F8F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==518498== by 0xF977418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==518498== by 0xF910D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==518498== by 0xE607D38: PetscInitialize (pinit.c:924) ==518498== by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==518498== by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==518498== by 0x1FF4E9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==518498== by 0x1F945F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==518498== by 0x1FC774: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==518498== by 0x1FC670: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==518498== by 0x1FCC83: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==518498== by 0x1F7C55: main (TestOffLatticeSimulation3d.cpp:18) ==518498== ==518498== Open file descriptor 8: /dev/shm/open_mpi.0000 ==518498== at 0x1015AC0C: __open_nocancel (open64_nocancel.c:39) ==518498== by 0x100DEBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==518498== by 0xE4A9822: ??? ==518498== by 0xE4A996F: ??? ==518498== by 0x140346DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==518498== by 0x14034938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==518498== by 0x13FEA922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==518498== by 0x13F8F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==518498== by 0xF977418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==518498== by 0xF910D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==518498== by 0xE607D38: PetscInitialize (pinit.c:924) ==518498== by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==518498== by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==518498== by 0x1FF4E9: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==518498== by 0x1F945F: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==518498== by 0x1FC774: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==518498== by 0x1FC670: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==518498== by 0x1FCC83: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==518498== by 0x1F7C55: main (TestOffLatticeSimulation3d.cpp:18) ==518498== ==518498== Open file descriptor 116: ==518498== ==518498== ==518498== Open file descriptor 112: ==518498== ==518498== ==518498== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulation3d_valgrind.txt ==518498== ==518498== ==518498== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==518498== ==518498== ==518498== ==518498== HEAP SUMMARY: ==518498== in use at exit: 835,628 bytes in 11,677 blocks ==518498== total heap usage: 862,638 allocs, 850,961 frees, 1,705,757,520 bytes allocated ==518498== ==518498== LEAK SUMMARY: ==518498== definitely lost: 0 bytes in 0 blocks ==518498== indirectly lost: 0 bytes in 0 blocks ==518498== possibly lost: 0 bytes in 0 blocks ==518498== still reachable: 56 bytes in 3 blocks ==518498== suppressed: 835,572 bytes in 11,674 blocks ==518498== Reachable blocks (those to which a pointer was found) are not shown. ==518498== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==518498== ==518498== For lists of detected and suppressed errors, rerun with: -s ==518498== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)