==558259== Memcheck, a memory error detector ==558259== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==558259== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==558259== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestAlarcon2004OxygenBasedCellCycleOdeSystem -malloc_debug -malloc_dump -memory_info ==558259== Parent PID: 556816 ==558259== ==558259== ==558259== FILE DESCRIPTORS: 9 open (3 std) at exit. ==558259== Open file descriptor 12: ==558259== at 0xE6A426D: pipe (pipe.c:29) ==558259== by 0x18A1E07D: ??? ==558259== by 0x12FCE4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==558259== by 0xE2F1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==558259== by 0xE28AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==558259== by 0xCF81D38: PetscInitialize (pinit.c:924) ==558259== by 0xCDE9153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==558259== by 0xCDE91A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==558259== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==558259== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==558259== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==558259== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==558259== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==558259== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==558259== ==558259== Open file descriptor 8: /dev/shm/open_mpi.0000 ==558259== at 0xE6A8C0C: __open_nocancel (open64_nocancel.c:39) ==558259== by 0xE62CBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==558259== by 0xCE23822: ??? ==558259== by 0xCE2396F: ??? ==558259== by 0x130736DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==558259== by 0x13073938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==558259== by 0x13029922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==558259== by 0x12FCE2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==558259== by 0xE2F1418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==558259== by 0xE28AD7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==558259== by 0xCF81D38: PetscInitialize (pinit.c:924) ==558259== by 0xCDE9153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==558259== by 0xCDE91A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==558259== by 0x123229: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==558259== by 0x11E723: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==558259== by 0x120D04: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==558259== by 0x120C00: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==558259== by 0x121213: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==558259== by 0x11CF25: main (TestAlarcon2004OxygenBasedCellCycleOdeSystem.cpp:18) ==558259== ==558259== Open file descriptor 116: ==558259== ==558259== ==558259== Open file descriptor 112: ==558259== ==558259== ==558259== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestAlarcon2004OxygenBasedCellCycleOdeSystem_valgrind.txt ==558259== ==558259== ==558259== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==558259== ==558259== ==558259== ==558259== HEAP SUMMARY: ==558259== in use at exit: 835,596 bytes in 11,676 blocks ==558259== total heap usage: 173,935 allocs, 162,259 frees, 1,551,335,635 bytes allocated ==558259== ==558259== LEAK SUMMARY: ==558259== definitely lost: 0 bytes in 0 blocks ==558259== indirectly lost: 0 bytes in 0 blocks ==558259== possibly lost: 0 bytes in 0 blocks ==558259== still reachable: 24 bytes in 2 blocks ==558259== suppressed: 835,572 bytes in 11,674 blocks ==558259== Reachable blocks (those to which a pointer was found) are not shown. ==558259== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==558259== ==558259== For lists of detected and suppressed errors, rerun with: -s ==558259== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 37 from 37)