==557069== Memcheck, a memory error detector ==557069== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==557069== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==557069== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/io/test/TestHdf5DataReader -malloc_debug -malloc_dump -memory_info ==557069== Parent PID: 556816 ==557069== ==557069== ==557069== FILE DESCRIPTORS: 9 open (3 std) at exit. ==557069== Open file descriptor 12: ==557069== at 0x646426D: pipe (pipe.c:29) ==557069== by 0xAF1607D: ??? ==557069== by 0x8F454CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==557069== by 0x665E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==557069== by 0x65F7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==557069== by 0x4A95D38: PetscInitialize (pinit.c:924) ==557069== by 0x496D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==557069== by 0x496D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==557069== by 0x11BB1C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==557069== by 0x117033: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==557069== by 0x119B8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==557069== by 0x119A2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==557069== by 0x11A0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==557069== by 0x1151B5: main (TestHdf5DataReader.cpp:19) ==557069== ==557069== Open file descriptor 8: /dev/shm/open_mpi.0000 ==557069== at 0x6468C0C: __open_nocancel (open64_nocancel.c:39) ==557069== by 0x63ECBCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==557069== by 0x5D25822: ??? ==557069== by 0x5D2596F: ??? ==557069== by 0x8FEA6DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==557069== by 0x8FEA938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==557069== by 0x8FA0922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==557069== by 0x8F452DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==557069== by 0x665E418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==557069== by 0x65F7D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==557069== by 0x4A95D38: PetscInitialize (pinit.c:924) ==557069== by 0x496D153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==557069== by 0x496D1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==557069== by 0x11BB1C: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==557069== by 0x117033: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==557069== by 0x119B8A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==557069== by 0x119A2A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==557069== by 0x11A0C1: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==557069== by 0x1151B5: main (TestHdf5DataReader.cpp:19) ==557069== ==557069== Open file descriptor 116: ==557069== ==557069== ==557069== Open file descriptor 112: ==557069== ==557069== ==557069== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestHdf5DataReader_valgrind.txt ==557069== ==557069== ==557069== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==557069== ==557069== ==557069== ==557069== HEAP SUMMARY: ==557069== in use at exit: 835,628 bytes in 11,686 blocks ==557069== total heap usage: 66,894 allocs, 55,208 frees, 1,550,516,378 bytes allocated ==557069== ==557069== LEAK SUMMARY: ==557069== definitely lost: 0 bytes in 0 blocks ==557069== indirectly lost: 0 bytes in 0 blocks ==557069== possibly lost: 0 bytes in 0 blocks ==557069== still reachable: 24 bytes in 2 blocks ==557069== suppressed: 835,604 bytes in 11,684 blocks ==557069== Reachable blocks (those to which a pointer was found) are not shown. ==557069== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==557069== ==557069== For lists of detected and suppressed errors, rerun with: -s ==557069== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 41 from 35)