==558666== Memcheck, a memory error detector ==558666== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==558666== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==558666== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOffLatticeSimulation -malloc_debug -malloc_dump -memory_info ==558666== Parent PID: 556816 ==558666== ==558666== ==558666== FILE DESCRIPTORS: 9 open (3 std) at exit. ==558666== Open file descriptor 12: ==558666== at 0xECA126D: pipe (pipe.c:29) ==558666== by 0x18A1E07D: ??? ==558666== by 0x1402F4CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==558666== by 0x108FD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==558666== by 0x10896D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==558666== by 0xF58DD38: PetscInitialize (pinit.c:924) ==558666== by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==558666== by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==558666== by 0x311532: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==558666== by 0x307AD9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==558666== by 0x30BEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==558666== by 0x30BD80: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==558666== by 0x30C417: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==558666== by 0x305EF5: main (TestOffLatticeSimulation.cpp:19) ==558666== ==558666== Open file descriptor 8: /dev/shm/open_mpi.0000 ==558666== at 0xECA5C0C: __open_nocancel (open64_nocancel.c:39) ==558666== by 0xEC29BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==558666== by 0xE4A9822: ??? ==558666== by 0xE4A996F: ??? ==558666== by 0x140D46DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==558666== by 0x140D4938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==558666== by 0x1408A922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==558666== by 0x1402F2DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==558666== by 0x108FD418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==558666== by 0x10896D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==558666== by 0xF58DD38: PetscInitialize (pinit.c:924) ==558666== by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==558666== by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==558666== by 0x311532: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==558666== by 0x307AD9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==558666== by 0x30BEE0: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==558666== by 0x30BD80: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==558666== by 0x30C417: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==558666== by 0x305EF5: main (TestOffLatticeSimulation.cpp:19) ==558666== ==558666== Open file descriptor 116: ==558666== ==558666== ==558666== Open file descriptor 112: ==558666== ==558666== ==558666== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOffLatticeSimulation_valgrind.txt ==558666== ==558666== ==558666== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==558666== ==558666== ==558666== ==558666== HEAP SUMMARY: ==558666== in use at exit: 835,562 bytes in 11,673 blocks ==558666== total heap usage: 12,871,106 allocs, 12,859,433 frees, 4,065,137,637 bytes allocated ==558666== ==558666== LEAK SUMMARY: ==558666== definitely lost: 0 bytes in 0 blocks ==558666== indirectly lost: 0 bytes in 0 blocks ==558666== possibly lost: 0 bytes in 0 blocks ==558666== still reachable: 56 bytes in 3 blocks ==558666== suppressed: 835,506 bytes in 11,670 blocks ==558666== Reachable blocks (those to which a pointer was found) are not shown. ==558666== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==558666== ==558666== For lists of detected and suppressed errors, rerun with: -s ==558666== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 33 from 33)