==559087== Memcheck, a memory error detector ==559087== Copyright (C) 2002-2017, and GNU GPL'd, by Julian Seward et al. ==559087== Using Valgrind-3.18.1 and LibVEX; rerun with -h for copyright info ==559087== Command: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithCaBasedCellPopulation -malloc_debug -malloc_dump -memory_info ==559087== Parent PID: 556816 ==559087== ==559087== ==559087== FILE DESCRIPTORS: 9 open (3 std) at exit. ==559087== Open file descriptor 12: ==559087== at 0xF11D26D: pipe (pipe.c:29) ==559087== by 0x18A1F07D: ??? ==559087== by 0x141544CB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==559087== by 0x10D79418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==559087== by 0x10D12D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==559087== by 0xFA09D38: PetscInitialize (pinit.c:924) ==559087== by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==559087== by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==559087== by 0x1D3486: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==559087== by 0x1CCDB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==559087== by 0x1D0554: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==559087== by 0x1D03F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==559087== by 0x1D0A8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==559087== by 0x1CB1D5: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==559087== ==559087== Open file descriptor 8: /dev/shm/open_mpi.0000 ==559087== at 0xF121C0C: __open_nocancel (open64_nocancel.c:39) ==559087== by 0xF0A5BCF: shm_open@@GLIBC_2.34 (shm_open.c:40) ==559087== by 0xE4A9822: ??? ==559087== by 0xE4A996F: ??? ==559087== by 0x141F96DC: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==559087== by 0x141F9938: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==559087== by 0x141AF922: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.40.30.2) ==559087== by 0x141542DB: orte_init (in /usr/lib/x86_64-linux-gnu/libopen-rte.so.40.30.2) ==559087== by 0x10D79418: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==559087== by 0x10D12D7A: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.30.2) ==559087== by 0xFA09D38: PetscInitialize (pinit.c:924) ==559087== by 0xE46F153: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==559087== by 0xE46F1A1: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==559087== by 0x1D3486: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==559087== by 0x1CCDB9: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==559087== by 0x1D0554: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==559087== by 0x1D03F4: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==559087== by 0x1D0A8B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==559087== by 0x1CB1D5: main (TestOnLatticeSimulationWithCaBasedCellPopulation.cpp:19) ==559087== ==559087== Open file descriptor 116: ==559087== ==559087== ==559087== Open file descriptor 112: ==559087== ==559087== ==559087== Open file descriptor 4: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/memtest/TestOnLatticeSimulationWithCaBasedCellPopulation_valgrind.txt ==559087== ==559087== ==559087== Open file descriptor 3: /home/gh/actions-runner/_work/Chaste/Chaste/Chaste/chaste-build-dir/Testing/Temporary/LastTest.log.tmp ==559087== ==559087== ==559087== ==559087== HEAP SUMMARY: ==559087== in use at exit: 835,562 bytes in 11,673 blocks ==559087== total heap usage: 7,400,466 allocs, 7,388,793 frees, 8,325,607,727 bytes allocated ==559087== ==559087== LEAK SUMMARY: ==559087== definitely lost: 0 bytes in 0 blocks ==559087== indirectly lost: 0 bytes in 0 blocks ==559087== possibly lost: 0 bytes in 0 blocks ==559087== still reachable: 56 bytes in 3 blocks ==559087== suppressed: 835,506 bytes in 11,670 blocks ==559087== Reachable blocks (those to which a pointer was found) are not shown. ==559087== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==559087== ==559087== For lists of detected and suppressed errors, rerun with: -s ==559087== ERROR SUMMARY: 0 errors from 0 contexts (suppressed: 36 from 36)